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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class SuiteSparse(Package):
"""
SuiteSparse is a suite of sparse matrix algorithms
"""
homepage = 'https://people.engr.tamu.edu/davis/suitesparse.html'
url = 'https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v4.5.3.tar.gz'
git = 'https://github.com/DrTimothyAldenDavis/SuiteSparse.git'
version('5.10.1', sha256='acb4d1045f48a237e70294b950153e48dce5b5f9ca8190e86c2b8c54ce00a7ee')
version('5.10.0', sha256='4bcc974901c0173acf80c41ee0fd779eb7dce2871d4afa24a5d15b1a468f93e5')
version('5.9.0', sha256='7bdd4811f1cf0767c5fdb5e435817fdadee50b0acdb598f4882ae7b8291a7f24')
version('5.8.1', sha256='06726e471fbaa55f792578f9b4ab282ea9d008cf39ddcc3b42b73400acddef40')
version('5.8.0', sha256='94a9b7134eb4dd82b97f1a22a6b464feb81e73af2dcdf683c6f252285191df1d')
version('5.7.2', sha256='fe3bc7c3bd1efdfa5cffffb5cebf021ff024c83b5daf0ab445429d3d741bd3ad')
version('5.7.1', sha256='5ba5add1663d51a1b6fb128b50fe869b497f3096765ff7f8212f0ede044b9557')
version('5.6.0', sha256='76d34d9f6dafc592b69af14f58c1dc59e24853dcd7c2e8f4c98ffa223f6a1adb')
version('5.5.0', sha256='63c73451734e2bab19d1915796c6776565ea6aea5da4063a9797ecec60da2e3d')
version('5.4.0', sha256='d9d62d539410d66550d0b795503a556830831f50087723cb191a030525eda770')
version('5.3.0', sha256='d8ef4bee4394d2f07299d4688b83bbd98e9d3a2ebbe1c1632144b6f7095ce165')
version('5.2.0', sha256='68c431aef3d9a0b02e97803eb61671c5ecb9d36fd292a807db87067dadb36e53')
version('5.1.2', sha256='97dc5fdc7f78ff5018e6a1fcc841e17a9af4e5a35cebd62df6922349bf12959e')
version('5.1.0', sha256='0b0e03c63e67b04529bb6248808d2a8c82259d40b30fc5a7599f4b6f7bdd4dc6')
version('5.0.0', sha256='2f8694d9978033659f10ceb8bdb19147d3c519a0251b8de84be6ba8824d30517')
version('4.5.6', sha256='1c7b7a265a1d6c606095eb8aa3cb8e27821f1b7f5bc04f28df6d62906e02f4e4')
version('4.5.5', sha256='80d1d9960a6ec70031fecfe9adfe5b1ccd8001a7420efb50d6fa7326ef14af91')
version('4.5.3', sha256='b6965f9198446a502cde48fb0e02236e75fa5700b94c7306fc36599d57b563f4')
variant('tbb', default=False, description='Build with Intel TBB')
variant('pic', default=True, description='Build position independent code (required to link with shared libraries)')
variant('cuda', default=False, description='Build with CUDA')
variant('openmp', default=False, description='Build with OpenMP')
depends_on('mpfr@4.0.0:', type=('build', 'link'), when='@5.8.0:')
depends_on('gmp', type=('build', 'link'), when='@5.8.0:')
depends_on('blas')
depends_on('lapack')
depends_on('m4', type='build', when='@5.0.0:')
depends_on('cmake', when='@5.2.0:', type='build')
depends_on('metis@5.1.0', when='@4.5.1:')
# in @4.5.1. TBB support in SPQR seems to be broken as TBB-related linkng
# flags does not seem to be used, which leads to linking errors on Linux.
depends_on('tbb', when='@4.5.3:+tbb')
depends_on('cuda', when='+cuda')
patch('tbb_453.patch', when='@4.5.3:4.5.5+tbb')
# This patch removes unsupported flags for pgi compiler
patch('pgi.patch', when='%pgi')
patch('pgi.patch', when='%nvhpc')
# This patch adds '-lm' when linking libgraphblas and when using clang.
# Fixes 'libgraphblas.so.2.0.1: undefined reference to `__fpclassify''
patch('graphblas_libm_dep.patch', when='@5.2.0:5.2.99%clang')
# CUDA-11 dropped sm_30 code generation, remove hardcoded sm_30 from makefile
# open issue: https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/56
# Tested only with 5.9.0, previous versions probably work too
patch('fix_cuda11.patch', when='@5.9.0:+cuda ^cuda@11:')
conflicts('%gcc@:4.8', when='@5.2.0:', msg='gcc version must be at least 4.9 for suite-sparse@5.2.0:')
def install(self, spec, prefix):
# The build system of SuiteSparse is quite old-fashioned.
# It's basically a plain Makefile which include an header
# (SuiteSparse_config/SuiteSparse_config.mk)with a lot of convoluted
# logic in it. Any kind of customization will need to go through
# filtering of that file
cc_pic_flag = self.compiler.cc_pic_flag if '+pic' in spec else ''
f77_pic_flag = self.compiler.f77_pic_flag if '+pic' in spec else ''
make_args = [
# By default, the Makefile uses the Intel compilers if
# they are found. The AUTOCC flag disables this behavior,
# forcing it to use Spack's compiler wrappers.
'AUTOCC=no',
# CUDA=no does NOT disable cuda, it only disables internal search
# for CUDA_PATH. If in addition the latter is empty, then CUDA is
# completely disabled. See
# [SuiteSparse/SuiteSparse_config/SuiteSparse_config.mk] for more.
'CUDA=no',
'CUDA_PATH=%s' % (spec['cuda'].prefix if '+cuda' in spec else ''),
'CFOPENMP=%s' % (self.compiler.openmp_flag
if '+openmp' in spec else ''),
'CFLAGS=-O3 %s' % cc_pic_flag,
# Both FFLAGS and F77FLAGS are used in SuiteSparse makefiles;
# FFLAGS is used in CHOLMOD, F77FLAGS is used in AMD and UMFPACK.
'FFLAGS=%s' % f77_pic_flag,
'F77FLAGS=%s' % f77_pic_flag,
# use Spack's metis in CHOLMOD/Partition module,
# otherwise internal Metis will be compiled
'MY_METIS_LIB=%s' % spec['metis'].libs.ld_flags,
'MY_METIS_INC=%s' % spec['metis'].prefix.include,
# Make sure Spack's Blas/Lapack is used. Otherwise System's
# Blas/Lapack might be picked up. Need to add -lstdc++, following
# with the TCOV path of SparseSuite 4.5.1's Suitesparse_config.mk,
# even though this fix is ugly
'BLAS=%s' % (spec['blas'].libs.ld_flags + (
' -lstdc++' if '@4.5.1' in spec else '')),
'LAPACK=%s' % spec['lapack'].libs.ld_flags,
]
# Recent versions require c11 but some demos do not get the c11 from
# GraphBLAS/CMakeLists.txt, for example the file
# GraphBLAS/Demo/Program/wildtype_demo.c. For many compilers this is
# not an issue because c11 or newer is their default. However, for some
# compilers (e.g. xlc) the c11 flag is necessary.
if spec.satisfies('@5.4:5.7.1') and ('%xl' in spec or '%xl_r' in spec):
make_args += ['CFLAGS+=%s' % self.compiler.c11_flag]
# 64bit blas in UMFPACK:
if (spec.satisfies('^openblas+ilp64') or
spec.satisfies('^intel-mkl+ilp64') or
spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
make_args.append('UMFPACK_CONFIG=-DLONGBLAS="long long"')
# SuiteSparse defaults to using '-fno-common -fexceptions' in
# CFLAGS, but not all compilers use the same flags for these
# optimizations
if any([x in spec for x in
('%apple-clang', '%clang', '%gcc', '%intel', '%fj')]):
make_args += ['CFLAGS+=-fno-common -fexceptions']
elif '%pgi' in spec:
make_args += ['CFLAGS+=--exceptions']
if spack_f77.endswith('xlf') or spack_f77.endswith('xlf_r'):
make_args += ['CFLAGS+=-DBLAS_NO_UNDERSCORE']
# Intel TBB in SuiteSparseQR
if 'tbb' in spec:
make_args += [
'SPQR_CONFIG=-DHAVE_TBB',
'TBB=%s' % spec['tbb'].libs.ld_flags,
]
if '@5.3:' in spec:
# Without CMAKE_LIBRARY_PATH defined, the CMake file in the
# Mongoose directory finds libsuitesparseconfig.so in system
# directories like /usr/lib.
make_args += [
'CMAKE_OPTIONS=-DCMAKE_INSTALL_PREFIX=%s' % prefix +
' -DCMAKE_LIBRARY_PATH=%s' % prefix.lib]
# In those SuiteSparse versions calling "make install" in one go is
# not possible, mainly because of GraphBLAS. Thus compile first and
# install in a second run.
if '@5.4.0:' in self.spec:
make('library', *make_args)
make_args.append('INSTALL=%s' % prefix)
make('install', *make_args)
@run_after('install')
def fix_darwin_install(self):
# The shared libraries are not installed correctly on Darwin:
# See https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/42
if '+pic platform=darwin' in self.spec:
fix_darwin_install_name(self.spec.prefix.lib)
@property
def libs(self):
"""Export the libraries of SuiteSparse.
Sample usage: spec['suite-sparse'].libs.ld_flags
spec['suite-sparse:klu,btf'].libs.ld_flags
"""
# Component libraries, ordered by dependency. Any missing components?
all_comps = ['klu', 'btf', 'umfpack', 'cholmod', 'colamd', 'amd',
'camd', 'ccolamd', 'cxsparse', 'ldl', 'rbio', 'spqr',
'suitesparseconfig']
query_parameters = self.spec.last_query.extra_parameters
comps = all_comps if not query_parameters else query_parameters
libs = find_libraries(['lib' + c for c in comps], root=self.prefix.lib,
shared=True, recursive=False)
if not libs:
return None
libs += find_system_libraries('librt')
return libs
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