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|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import os
import sys
class Sundials(CMakePackage):
"""SUNDIALS (SUite of Nonlinear and DIfferential/ALgebraic equation
Solvers)"""
homepage = "https://computation.llnl.gov/projects/sundials"
url = "https://computation.llnl.gov/projects/sundials/download/sundials-2.7.0.tar.gz"
maintainers = ['cswoodward', 'gardner48', 'balos1']
# ==========================================================================
# Versions
# ==========================================================================
version('4.0.0-dev.2', sha256='124fc12f2a68d32210c20f5005510607e0833764afaef2a70b741bc922519984')
version('4.0.0-dev.1', sha256='6354e1d266b60c23766137b4ffa9bbde8bca97a562ccd94cab756b597ed753c1')
version('4.0.0-dev', sha256='50e526327461aebe463accf6ef56f9c6773df65025f3020b9ce68b83bbf5dd27')
version('3.2.1', sha256='47d94d977ab2382cdcdd02f72a25ebd4ba8ca2634bbb2f191fe1636e71c86808', preferred=True)
version('3.2.0', sha256='d2b690afecadf8b5a048bb27ab341de591d714605b98d3518985dfc2250e93f9')
version('3.1.2', sha256='a8985bb1e851d90e24260450667b134bc13d71f5c6effc9e1d7183bd874fe116')
version('3.1.1', sha256='a24d643d31ed1f31a25b102a1e1759508ce84b1e4739425ad0e18106ab471a24')
version('3.1.0', sha256='18d52f8f329626f77b99b8bf91e05b7d16b49fde2483d3a0ea55496ce4cdd43a')
version('3.0.0', sha256='28b8e07eecfdef66e2c0d0ea0cb1b91af6e4e94d71008abfe80c27bf39f63fde')
version('2.7.0', sha256='d39fcac7175d701398e4eb209f7e92a5b30a78358d4a0c0fcc23db23c11ba104')
version('2.6.2', sha256='d8ed0151509dd2b0f317b318a4175f8b95a174340fc3080b8c20617da8aa4d2f')
# ==========================================================================
# Variants
# ==========================================================================
# SUNDIALS solvers
sun_solvers = ['CVODE', 'CVODES', 'ARKODE', 'IDA', 'IDAS', 'KINSOL']
for pkg in sun_solvers:
variant(pkg, default=True,
description='Enable %s solver' % pkg)
# Real type
variant(
'precision',
default='double',
description='real type precision',
values=('single', 'double', 'extended'),
multi=False
)
# Index type
variant('int64', default=False,
description='Use 64bit integers for indices')
# Parallelism
variant('mpi', default=True,
description='Enable MPI parallel vector')
variant('openmp', default=False,
description='Enable OpenMP parallel vector')
variant('pthread', default=False,
description='Enable Pthreads parallel vector')
variant('cuda', default=False,
description='Enable CUDA parallel vector')
variant('raja', default=False,
description='Enable RAJA parallel vector')
# External libraries
variant('lapack', default=False,
description='Enable LAPACK direct solvers')
variant('klu', default=False,
description='Enable KLU sparse, direct solver')
variant('superlu-mt', default=False,
description='Enable SuperLU_MT sparse, direct solver')
variant('hypre', default=False,
description='Enable Hypre MPI parallel vector')
variant('petsc', default=False,
description='Enable PETSc MPI parallel vector')
# Library type
variant('shared', default=True,
description='Build shared libraries')
variant('static', default=True,
description='Build static libraries')
# Fortran interface
variant('fcmix', default=False,
description='Enable Fortran interface')
# Examples
variant('examples-c', default=True,
description='Enable C examples')
variant('examples-cxx', default=False,
description='Enable C++ examples')
variant('examples-f77', default=True,
description='Enable Fortran 77 examples')
variant('examples-f90', default=False,
description='Enable Fortran 90 examples')
variant('examples-cuda', default=False,
description='Enable CUDA examples')
variant('examples-raja', default=False,
description='Enable RAJA examples')
variant('examples-install', default=True,
description='Install examples')
# Generic (std-c) math libraries (UNIX only)
variant('generic-math', default=True,
description='Use generic (std-c) math libraries on unix systems')
# ==========================================================================
# Conflicts
# ==========================================================================
# Options added after v2.6.2
conflicts('+hypre', when='@:2.6.2')
conflicts('+petsc', when='@:2.6.2')
# Options added after v2.7.0
conflicts('+cuda', when='@:2.7.0')
conflicts('+raja', when='@:2.7.0')
conflicts('~int64', when='@:2.7.0')
conflicts('+examples-cuda', when='@:2.7.0')
conflicts('+examples-raja', when='@:2.7.0')
# External libraries incompatible with 64-bit indices
conflicts('+lapack', when='@3.0.0: +int64')
conflicts('+hypre', when='+hypre@:2.6.1a +int64')
# External libraries incompatible with single precision
conflicts('+klu', when='precision=single')
conflicts('+hypre', when='+hypre@:2.12.0 precision=single')
# External libraries incompatible with extended (quad) precision
conflicts('+lapack', when='precision=extended')
conflicts('+superlu-mt', when='precision=extended')
conflicts('+klu', when='precision=extended')
conflicts('+hypre', when='+hypre@:2.12.0 precision=extended')
# External libraries that need to be built with MPI
conflicts('+hypre', when='~mpi')
conflicts('+petsc', when='~mpi')
# SuperLU_MT interface requires lapack for external blas (before v3.0.0)
conflicts('+superlu-mt', when='@:2.7.0 ~lapack')
# ==========================================================================
# Dependencies
# ==========================================================================
# Build dependencies
depends_on('cmake@2.8.1:', type='build')
depends_on('cmake@2.8.12:', type='build', when='@3.1.2')
depends_on('cmake@3.0.2:', type='build', when='@4.0.0-dev.1')
depends_on('cmake@3.1.3:', type='build', when='@3.2.0,4.0.0-dev.2')
# MPI related dependencies
depends_on('mpi', when='+mpi')
depends_on('mpi', when='+hypre')
depends_on('mpi', when='+petsc')
# Other parallelism dependencies
depends_on('cuda', when='+cuda')
depends_on('raja', when='+raja')
# External libraries
depends_on('blas', when='+lapack')
depends_on('lapack', when='+lapack')
depends_on('suite-sparse', when='+klu')
# Require that external libraries built with the same precision
depends_on('petsc~double~complex', when='+petsc precision=single')
depends_on('petsc+double~complex', when='+petsc precision=double')
# Require that external libraries built with the same index type
depends_on('hypre', when='+hypre')
depends_on('hypre~int64', when='+hypre ~int64')
depends_on('hypre+int64', when='+hypre +int64')
depends_on('petsc', when='+petsc')
depends_on('petsc~int64', when='+petsc ~int64')
depends_on('petsc+int64', when='+petsc +int64')
# Require that PETSc is built with MPI
depends_on('petsc+mpi', when='+petsc')
# Require that SuperLU_MT built with external blas
depends_on('superlu-mt+blas', when='+superlu-mt')
# ==========================================================================
# Patches
# ==========================================================================
# remove OpenMP header file and function from hypre vector test code
patch('test_nvector_parhyp.patch', when='@2.7.0:3.0.0')
# ==========================================================================
# SUNDIALS Settings
# ==========================================================================
def cmake_args(self):
spec = self.spec
def on_off(varstr):
return 'ON' if varstr in self.spec else 'OFF'
fortran_flag = self.compiler.pic_flag
if (spec.satisfies('%clang platform=darwin')) and ('+fcmix' in spec):
f77 = Executable(self.compiler.f77)
libgfortran = LibraryList(f77('--print-file-name',
'libgfortran.a', output=str))
fortran_flag += ' ' + libgfortran.ld_flags
# List of CMake arguments
# Note: CMAKE_INSTALL_PREFIX and CMAKE_BUILD_TYPE are set automatically
args = []
# SUNDIALS solvers
for pkg in self.sun_solvers:
args.extend(['-DBUILD_%s=%s' % (pkg, on_off('+' + pkg))])
# precision
args.extend([
'-DSUNDIALS_PRECISION=%s' % spec.variants['precision'].value
])
# index type (v3.0.0 or later)
if spec.satisfies('@3.0.0:'):
if '+int64' in spec:
args.extend(['-DSUNDIALS_INDEX_TYPE=int64_t'])
else:
args.extend(['-DSUNDIALS_INDEX_TYPE=int32_t'])
# Fortran interface
args.extend(['-DFCMIX_ENABLE=%s' % on_off('+fcmix')])
# library type
args.extend([
'-DBUILD_SHARED_LIBS=%s' % on_off('+shared'),
'-DBUILD_STATIC_LIBS=%s' % on_off('+static')
])
# generic (std-c) math libraries
args.extend([
'-DUSE_GENERIC_MATH=%s' % on_off('+generic-math')
])
# parallelism
args.extend([
'-DMPI_ENABLE=%s' % on_off('+mpi'),
'-DOPENMP_ENABLE=%s' % on_off('+openmp'),
'-DPTHREAD_ENABLE=%s' % on_off('+pthread'),
'-DCUDA_ENABLE=%s' % on_off('+cuda'),
'-DRAJA_ENABLE=%s' % on_off('+raja')
])
# MPI support
if '+mpi' in spec:
args.extend(['-DMPI_MPICC=%s' % spec['mpi'].mpicc])
if 'examples-cxx' in spec:
args.extend(['-DMPI_MPICXX=%s' % spec['mpi'].mpicxx])
if ('+fcmix' in spec) and ('+examples-f77' in spec):
args.extend(['-DMPI_MPIF77=%s' % spec['mpi'].mpif77])
if ('+fcmix' in spec) and ('+examples-f90' in spec):
args.extend(['-DMPI_MPIF90=%s' % spec['mpi'].mpifc])
# Building with LAPACK and BLAS
if '+lapack' in spec:
args.extend([
'-DLAPACK_ENABLE=ON',
'-DLAPACK_LIBRARIES=%s'
% (spec['lapack'].libs + spec['blas'].libs).joined(';')
])
# Building with KLU
if '+klu' in spec:
args.extend([
'-DKLU_ENABLE=ON',
'-DKLU_INCLUDE_DIR=%s' % spec['suite-sparse'].prefix.include,
'-DKLU_LIBRARY_DIR=%s' % spec['suite-sparse'].prefix.lib
])
# Building with SuperLU_MT
if '+superlu-mt' in spec:
if spec.satisfies('@3.0.0:'):
args.extend([
'-DBLAS_ENABLE=ON',
'-DBLAS_LIBRARIES=%s' % spec['blas'].libs
])
args.extend([
'-DSUPERLUMT_ENABLE=ON',
'-DSUPERLUMT_INCLUDE_DIR=%s'
% spec['superlu-mt'].prefix.include,
'-DSUPERLUMT_LIBRARY_DIR=%s'
% spec['superlu-mt'].prefix.lib
])
if spec.satisfies('^superlu-mt+openmp'):
args.append('-DSUPERLUMT_THREAD_TYPE=OpenMP')
else:
args.append('-DSUPERLUMT_THREAD_TYPE=Pthread')
# Building with Hypre
if '+hypre' in spec:
args.extend([
'-DHYPRE_ENABLE=ON',
'-DHYPRE_INCLUDE_DIR=%s' % spec['hypre'].prefix.include,
'-DHYPRE_LIBRARY_DIR=%s' % spec['hypre'].prefix.lib
])
# Building with PETSc
if '+petsc' in spec:
args.extend([
'-DPETSC_ENABLE=ON',
'-DPETSC_INCLUDE_DIR=%s' % spec['petsc'].prefix.include,
'-DPETSC_LIBRARY_DIR=%s' % spec['petsc'].prefix.lib
])
# Building with RAJA
if '+raja' in spec:
args.extend([
'-DRAJA_DIR=%s' % spec['raja'].prefix.share.raja.cmake
])
# Examples
if spec.satisfies('@3.0.0:'):
args.extend([
'-DEXAMPLES_ENABLE_C=%s' % on_off('+examples-c'),
'-DEXAMPLES_ENABLE_CXX=%s' % on_off('+examples-cxx'),
'-DEXAMPLES_ENABLE_F77=%s' % on_off('+examples-f77'),
'-DEXAMPLES_ENABLE_F90=%s' % on_off('+examples-f90'),
'-DEXAMPLES_ENABLE_CUDA=%s' % on_off('+examples-cuda'),
'-DEXAMPLES_ENABLE_RAJA=%s' % on_off('+examples-raja')
])
else:
args.extend([
'-DEXAMPLES_ENABLE=%s' % on_off('+examples-c'),
'-DCXX_ENABLE=%s' % on_off('+examples-cxx'),
'-DF90_ENABLE=%s' % on_off('+examples-f90')
])
args.extend([
'-DEXAMPLES_INSTALL=%s' % on_off('+examples-install')
])
return args
# ==========================================================================
# Post Install Actions
# ==========================================================================
@run_after('install')
def post_install(self):
"""Run after install to fix install name of dynamic libraries
on Darwin to have full path and install the LICENSE file."""
spec = self.spec
prefix = self.spec.prefix
if (sys.platform == 'darwin'):
fix_darwin_install_name(prefix.lib)
if spec.satisfies('@:3.0.0'):
install('LICENSE', prefix)
@run_after('install')
def filter_compilers(self):
"""Run after install to tell the example program Makefiles
to use the compilers that Spack built the package with.
If this isn't done, they'll have CC, CPP, and F77 set to
Spack's generic cc and f77. We want them to be bound to
whatever compiler they were built with."""
spec = self.spec
kwargs = {'ignore_absent': True, 'backup': False, 'string': True}
dirname = os.path.join(self.prefix, 'examples')
cc_files = [
'arkode/C_openmp/Makefile',
'arkode/C_parallel/Makefile',
'arkode/C_parhyp/Makefile',
'arkode/C_serial/Makefile',
'cvode/C_openmp/Makefile',
'cvode/parallel/Makefile',
'cvode/parhyp/Makefile',
'cvode/serial/Makefile',
'cvodes/C_openmp/Makefile',
'cvodes/parallel/Makefile',
'cvodes/serial/Makefile',
'ida/C_openmp/Makefile',
'ida/parallel/Makefile',
'ida/petsc/Makefile',
'ida/serial/Makefile',
'idas/C_openmp/Makefile',
'idas/parallel/Makefile',
'idas/serial/Makefile',
'kinsol/C_openmp/Makefile',
'kinsol/parallel/Makefile',
'kinsol/serial/Makefile',
'nvector/C_openmp/Makefile',
'nvector/parallel/Makefile',
'nvector/parhyp/Makefile',
'nvector/petsc/Makefile',
'nvector/pthreads/Makefile',
'nvector/serial/Makefile',
'sunlinsol/band/Makefile',
'sunlinsol/dense/Makefile',
'sunlinsol/klu/Makefile',
'sunlinsol/lapackband/Makefile',
'sunlinsol/lapackdense/Makefile',
'sunlinsol/pcg/parallel/Makefile',
'sunlinsol/pcg/serial/Makefile',
'sunlinsol/spbcgs/parallel/Makefile',
'sunlinsol/spbcgs/serial/Makefile',
'sunlinsol/spfgmr/parallel/Makefile',
'sunlinsol/spfgmr/serial/Makefile',
'sunlinsol/spgmr/parallel/Makefile',
'sunlinsol/spgmr/serial/Makefile',
'sunlinsol/sptfqmr/parallel/Makefile',
'sunlinsol/sptfqmr/serial/Makefile',
'sunlinsol/superlumt/Makefile',
'sunmatrix/band/Makefile',
'sunmatrix/dense/Makefile',
'sunmatrix/sparse/Makefile'
]
cxx_files = [
'arkode/CXX_parallel/Makefile',
'arkode/CXX_serial/Makefile'
'cvode/cuda/Makefile',
'cvode/raja/Makefile',
'nvector/cuda/Makefile',
'nvector/raja/Makefile'
]
f77_files = [
'arkode/F77_parallel/Makefile',
'arkode/F77_serial/Makefile',
'cvode/fcmix_parallel/Makefile',
'cvode/fcmix_serial/Makefile',
'ida/fcmix_openmp/Makefile',
'ida/fcmix_parallel/Makefile',
'ida/fcmix_pthreads/Makefile',
'ida/fcmix_serial/Makefile',
'kinsol/fcmix_parallel/Makefile',
'kinsol/fcmix_serial/Makefile'
]
f90_files = [
'arkode/F90_parallel/Makefile',
'arkode/F90_serial/Makefile'
]
for filename in cc_files:
filter_file(os.environ['CC'], self.compiler.cc,
os.path.join(dirname, filename), **kwargs)
for filename in cc_files:
filter_file(r'^CPP\s*=.*', self.compiler.cc,
os.path.join(dirname, filename), **kwargs)
for filename in cxx_files:
filter_file(os.environ['CXX'], self.compiler.cxx,
os.path.join(dirname, filename), **kwargs)
for filename in cxx_files:
filter_file(r'^CPP\s*=.*', self.compiler.cc,
os.path.join(dirname, filename), **kwargs)
if ('+fcmix' in spec) and ('+examples-f77' in spec):
for filename in f77_files:
filter_file(os.environ['F77'], self.compiler.f77,
os.path.join(dirname, filename), **kwargs)
if ('+fcmix' in spec) and ('+examples-f90' in spec):
for filename in f90_files:
filter_file(os.environ['FC'], self.compiler.fc,
os.path.join(dirname, filename), **kwargs)
@property
def headers(self):
"""Export the headers and defines of SUNDIALS.
Sample usage: spec['sundials'].headers.cpp_flags
"""
# SUNDIALS headers are inside subdirectories, so we use a fake header
# in the include directory.
hdr = find(self.prefix.include.nvector, 'nvector_serial.h',
recursive=False)
return HeaderList(join_path(self.spec.prefix.include, 'fake.h')) \
if hdr else None
@property
def libs(self):
"""Export the libraries of SUNDIALS.
Sample usage: spec['sundials'].libs.ld_flags
spec['sundials:arkode,cvode'].libs.ld_flags
"""
query_parameters = self.spec.last_query.extra_parameters
if not query_parameters:
sun_libs = 'libsundials_*[!0-9]'
# Q: should the result be ordered by dependency?
else:
sun_libs = ['libsundials_' + p for p in query_parameters]
search_paths = [[self.prefix.lib, False], [self.prefix.lib64, False],
[self.prefix, True]]
is_shared = '+shared' in self.spec
for path, recursive in search_paths:
libs = find_libraries(sun_libs, root=path, shared=is_shared,
recursive=recursive)
if libs:
return libs
return None # Raise an error
|
