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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Tabix(MakefilePackage):
"""Generic indexer for TAB-delimited genome position files"""
homepage = "https://github.com/samtools/tabix"
git = "https://github.com/samtools/tabix.git"
version('2013-12-16', commit='1ae158ac79b459f5feeed7490c67519b14ce9f35')
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
depends_on('zlib', type='link')
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.share.man.man1)
install('tabix', prefix.bin)
install('bgzip', prefix.bin)
install('tabix.py', prefix.bin)
install('tabix.1', prefix.share.man.man1)
install('tabix.tex', prefix.share)
install('TabixReader.java', prefix.bin)
install('libtabix.a', prefix.lib)
install_tree('perl', prefix.perl)
install_tree('python', prefix.python)
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