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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Tassel(Package):
"""TASSEL is a software package to evaluate traits associations,
evolutionary patterns, and linkage disequilibrium."""
homepage = "http://www.maizegenetics.net/tassel"
url = "https://bitbucket.org/tasseladmin/tassel-5-source/get/master.tar.gz"
version('2017-07-22', git='https://bitbucket.org/tasseladmin/tassel-5-standalone.git',
commit='ae96ae75c3c9a9e8026140b6c775fa4685bdf531')
depends_on('java', type=('build', 'run'))
depends_on('perl', type=('build', 'run'))
def install(self, spec, prefix):
install_tree('.', prefix.bin)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('CLASSPATH', prefix.bin.lib)
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