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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Tcoffee(MakefilePackage):
"""T-Coffee is a multiple sequence alignment program."""
homepage = "http://www.tcoffee.org/"
git = "https://github.com/cbcrg/tcoffee.git"
version("2017-08-17", commit="f389b558e91d0f82e7db934d9a79ce285f853a71")
depends_on("perl", type=("build", "run"))
depends_on("blast-plus")
depends_on("dialign-tx")
depends_on("viennarna")
depends_on("clustalw")
depends_on("tmalign")
depends_on("muscle")
depends_on("mafft")
depends_on("pcma")
depends_on("poamsa")
depends_on("probconsrna")
build_directory = "compile"
def build(self, spec, prefix):
with working_dir(self.build_directory):
make("t_coffee")
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install("t_coffee", prefix.bin)
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