1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
|
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os, sys, glob
# Trilinos is complicated to build, as an inspiration a couple of links to other repositories which build it:
# https://github.com/hpcugent/easybuild-easyblocks/blob/master/easybuild/easyblocks/t/trilinos.py#L111
# https://github.com/koecher/candi/blob/master/deal.II-toolchain/packages/trilinos.package
# https://gitlab.com/configurations/cluster-config/blob/master/trilinos.sh
# https://github.com/Homebrew/homebrew-science/blob/master/trilinos.rb
# and some relevant documentation/examples:
# https://github.com/trilinos/Trilinos/issues/175
class Trilinos(Package):
"""The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented
software framework for the solution of large-scale, complex multi-physics engineering and scientific problems.
A unique design feature of Trilinos is its focus on packages.
"""
homepage = "https://trilinos.org/"
url = "http://trilinos.csbsju.edu/download/files/trilinos-12.2.1-Source.tar.gz"
version('12.6.1', 'adcf2d3aab74cdda98f88fee19cd1442604199b0515ee3da4d80cbe8f37d00e4')
version('12.4.2', '7c830f7f0f68b8ad324690603baf404e')
version('12.2.1', '6161926ea247863c690e927687f83be9')
version('12.0.1', 'bd99741d047471e127b8296b2ec08017')
version('11.14.3', '2f4f83f8333e4233c57d0f01c4b57426')
version('11.14.2', 'a43590cf896c677890d75bfe75bc6254')
version('11.14.1', '40febc57f76668be8b6a77b7607bb67f')
variant('metis', default=True, description='Compile with METIS and ParMETIS')
variant('mumps', default=True, description='Compile with support for MUMPS solvers')
variant('superlu-dist', default=True, description='Compile with SuperluDist solvers')
variant('hypre', default=True, description='Compile with Hypre preconditioner')
variant('hdf5', default=True, description='Compile with HDF5')
variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers')
# not everyone has py-numpy activated, keep it disabled by default to avoid configure errors
variant('python', default=False, description='Build python wrappers')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds a debug version of the libraries')
# Everything should be compiled with -fpic
depends_on('blas')
depends_on('lapack')
depends_on('boost')
depends_on('matio')
depends_on('glm')
depends_on('swig')
depends_on('metis@5:',when='+metis')
depends_on('suite-sparse',when='+suite-sparse')
# MPI related dependencies
depends_on('mpi')
depends_on('netcdf+mpi')
depends_on('parmetis',when='+metis')
# Trilinos' Tribits config system is limited which makes it
# very tricky to link Amesos with static MUMPS, see
# https://trilinos.org/docs/dev/packages/amesos2/doc/html/classAmesos2_1_1MUMPS.html
# One could work it out by getting linking flags from mpif90 --showme:link (or alike)
# and adding results to -DTrilinos_EXTRA_LINK_FLAGS
# together with Blas and Lapack and ScaLAPACK and Blacs and -lgfortran and
# it may work at the end. But let's avoid all this by simply using shared libs
depends_on('mumps@5.0:+mpi+shared',when='+mumps')
depends_on('scalapack',when='+mumps')
depends_on('superlu-dist',when='+superlu-dist')
depends_on('hypre~internal-superlu',when='+hypre')
depends_on('hdf5+mpi',when='+hdf5')
depends_on('python',when='+python')
patch('umfpack_from_suitesparse.patch')
# check that the combination of variants makes sense
def variants_check(self):
if '+superlu-dist' in self.spec and self.spec.satisfies('@:11.4.3'):
# For Trilinos v11 we need to force SuperLUDist=OFF,
# since only the deprecated SuperLUDist v3.3 together with an Amesos patch
# is working.
raise RuntimeError('The superlu-dist variant can only be used with Trilinos @12.0.1:')
def install(self, spec, prefix):
self.variants_check()
cxx_flags = []
options = []
options.extend(std_cmake_args)
mpi_bin = spec['mpi'].prefix.bin
options.extend(['-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON',
'-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON',
'-DTrilinos_VERBOSE_CONFIGURE:BOOL=OFF',
'-DTrilinos_ENABLE_TESTS:BOOL=OFF',
'-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF',
'-DCMAKE_BUILD_TYPE:STRING=%s' % ('DEBUG' if '+debug' in spec else 'RELEASE'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF'),
'-DTPL_ENABLE_MPI:BOOL=ON',
'-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix,
'-DTPL_ENABLE_BLAS=ON',
'-DBLAS_LIBRARY_NAMES=blas', # FIXME: don't hardcode names
'-DBLAS_LIBRARY_DIRS=%s' % spec['blas'].prefix.lib,
'-DTPL_ENABLE_LAPACK=ON',
'-DLAPACK_LIBRARY_NAMES=lapack',
'-DLAPACK_LIBRARY_DIRS=%s' % spec['lapack'].prefix,
'-DTPL_ENABLE_Boost:BOOL=ON',
'-DBoost_INCLUDE_DIRS:PATH=%s' % spec['boost'].prefix.include,
'-DBoost_LIBRARY_DIRS:PATH=%s' % spec['boost'].prefix.lib,
'-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON',
'-DTrilinos_ENABLE_CXX11:BOOL=ON',
'-DTPL_ENABLE_Netcdf:BOOL=ON',
'-DTPL_ENABLE_HYPRE:BOOL=%s' % ('ON' if '+hypre' in spec else 'OFF'),
'-DTPL_ENABLE_HDF5:BOOL=%s' % ('ON' if '+hdf5' in spec else 'OFF'),
])
# Fortran lib
libgfortran = os.path.dirname (os.popen('%s --print-file-name libgfortran.a' % join_path(mpi_bin,'mpif90') ).read())
options.extend([
'-DTrilinos_EXTRA_LINK_FLAGS:STRING=-L%s/ -lgfortran' % libgfortran,
'-DTrilinos_ENABLE_Fortran=ON'
])
# for build-debug only:
#options.extend([
# '-DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE'
#])
# suite-sparse related
if '+suite-sparse' in spec:
options.extend([
'-DTPL_ENABLE_Cholmod:BOOL=OFF', # FIXME: Trilinos seems to be looking for static libs only, patch CMake TPL file?
#'-DTPL_ENABLE_Cholmod:BOOL=ON',
#'-DCholmod_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
#'-DCholmod_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
'-DTPL_ENABLE_UMFPACK:BOOL=ON',
'-DUMFPACK_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
'-DUMFPACK_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
'-DUMFPACK_LIBRARY_NAMES=umfpack;amd;colamd;cholmod;suitesparseconfig'
])
else:
options.extend([
'-DTPL_ENABLE_Cholmod:BOOL=OFF',
'-DTPL_ENABLE_UMFPACK:BOOL=OFF',
])
# metis / parmetis
if '+metis' in spec:
options.extend([
'-DTPL_ENABLE_METIS:BOOL=ON',
'-DMETIS_LIBRARY_DIRS=%s' % spec['metis'].prefix.lib,
'-DMETIS_LIBRARY_NAMES=metis',
'-DTPL_METIS_INCLUDE_DIRS=%s' % spec['metis'].prefix.include,
'-DTPL_ENABLE_ParMETIS:BOOL=ON',
'-DParMETIS_LIBRARY_DIRS=%s;%s' % (spec['parmetis'].prefix.lib,spec['metis'].prefix.lib),
'-DParMETIS_LIBRARY_NAMES=parmetis;metis',
'-DTPL_ParMETIS_INCLUDE_DIRS=%s' % spec['parmetis'].prefix.include
])
else:
options.extend([
'-DTPL_ENABLE_METIS:BOOL=OFF',
'-DTPL_ENABLE_ParMETIS:BOOL=OFF',
])
# mumps / scalapack
if '+mumps' in spec:
options.extend([
'-DTPL_ENABLE_MUMPS:BOOL=ON',
'-DMUMPS_LIBRARY_DIRS=%s' % spec['mumps'].prefix.lib,
'-DMUMPS_LIBRARY_NAMES=dmumps;mumps_common;pord', # order is important!
'-DTPL_ENABLE_SCALAPACK:BOOL=ON',
'-DSCALAPACK_LIBRARY_NAMES=scalapack' # FIXME: for MKL it's mkl_scalapack_lp64;mkl_blacs_mpich_lp64
])
# see https://github.com/trilinos/Trilinos/blob/master/packages/amesos/README-MUMPS
cxx_flags.extend([
'-DMUMPS_5_0'
])
else:
options.extend([
'-DTPL_ENABLE_MUMPS:BOOL=OFF',
'-DTPL_ENABLE_SCALAPACK:BOOL=OFF',
])
# superlu-dist:
if '+superlu-dist' in spec:
# Amesos, conflicting types of double and complex SLU_D
# see https://trilinos.org/pipermail/trilinos-users/2015-March/004731.html
# and https://trilinos.org/pipermail/trilinos-users/2015-March/004802.html
options.extend([
'-DTeuchos_ENABLE_COMPLEX:BOOL=OFF',
'-DKokkosTSQR_ENABLE_Complex:BOOL=OFF'
])
options.extend([
'-DTPL_ENABLE_SuperLUDist:BOOL=ON',
'-DSuperLUDist_LIBRARY_DIRS=%s' % spec['superlu-dist'].prefix.lib,
'-DSuperLUDist_INCLUDE_DIRS=%s' % spec['superlu-dist'].prefix.include
])
if spec.satisfies('^superlu-dist@4.0:'):
options.extend([
'-DHAVE_SUPERLUDIST_LUSTRUCTINIT_2ARG:BOOL=ON'
])
else:
options.extend([
'-DTPL_ENABLE_SuperLUDist:BOOL=OFF',
])
# python
if '+python' in spec:
options.extend([
'-DTrilinos_ENABLE_PyTrilinos:BOOL=ON'
])
else:
options.extend([
'-DTrilinos_ENABLE_PyTrilinos:BOOL=OFF'
])
# collect CXX flags:
options.extend([
'-DCMAKE_CXX_FLAGS:STRING=%s' % (' '.join(cxx_flags)),
])
# disable due to compiler / config errors:
options.extend([
'-DTrilinos_ENABLE_SEACAS=OFF',
'-DTrilinos_ENABLE_Pike=OFF',
'-DTrilinos_ENABLE_STK=OFF'
])
if sys.platform == 'darwin':
options.extend([
'-DTrilinos_ENABLE_FEI=OFF'
])
with working_dir('spack-build', create=True):
cmake('..', *options)
make()
make('install')
# When trilinos is built with Python, libpytrilinos is included through
# cmake configure files. Namely, Trilinos_LIBRARIES in TrilinosConfig.cmake
# contains pytrilinos. This leads to a run-time error:
# Symbol not found: _PyBool_Type
# and prevents Trilinos to be used in any C++ code, which links executable
# against the libraries listed in Trilinos_LIBRARIES.
# See https://github.com/Homebrew/homebrew-science/issues/2148#issuecomment-103614509
# A workaround it to remove PyTrilinos from the COMPONENTS_LIST :
if '+python' in self.spec:
filter_file(r'(SET\(COMPONENTS_LIST.*)(PyTrilinos;)(.*)', (r'\1\3'), '%s/cmake/Trilinos/TrilinosConfig.cmake' % prefix.lib)
# The shared libraries are not installed correctly on Darwin; correct this
if (sys.platform == 'darwin') and ('+shared' in spec):
fix_darwin_install_name(prefix.lib)
|
