blob: a08009be414386dd5a78741f19371e6d2b5e4654 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class TrnascanSe(AutotoolsPackage):
"""Seaching for tRNA genes in genomic sequence"""
homepage = "http://lowelab.ucsc.edu/tRNAscan-SE/"
url = "http://trna.ucsc.edu/software/trnascan-se-2.0.0.tar.gz"
version('2.0.0', sha256='0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c')
depends_on('infernal@1.1.2', type='run', when='@2.0.0')
def patch(self):
filter_file('infernal_dir: {bin_dir}',
'infernal_dir: %s' % self.spec['infernal'].prefix.bin,
'tRNAscan-SE.conf.src', string=True)
|
