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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Vardictjava(Package):
"""VarDictJava is a variant discovery program written in Java.
It is a partial Java port of VarDict variant caller."""
homepage = "https://github.com/AstraZeneca-NGS/VarDictJava"
url = (
"https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.5.1/VarDict-1.5.1.tar"
)
version("1.5.1", sha256="f1d710d238e8ab41b02a99fa8698baeee8c8668635a847b826913dd03a9176b9")
depends_on("java@8:", type="run")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("bin/VarDict", prefix.bin)
mkdirp(prefix.lib)
install("lib/*.jar", prefix.lib)
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