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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Viennarna(AutotoolsPackage):
"""The ViennaRNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures."""
homepage = "https://www.tbi.univie.ac.at/RNA/"
url = "https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_3_x/ViennaRNA-2.3.5.tar.gz"
version('2.3.5', '4542120adae9b7abb605e2304c2a1326')
variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
variant('perl', default=True, description='Build ViennaRNA with Perl interface')
variant('python', default=True, description='Build ViennaRNA with Python interface')
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
depends_on('libsvm')
depends_on('gsl')
def url_for_version(self, version):
url = 'https://www.tbi.univie.ac.at/RNA/download/sourcecode/{0}_x/ViennaRNA-{1}.tar.gz'
return url.format(version.up_to(2).underscored, version)
def configure_args(self):
args = []
if '+sse' in self.spec:
args.append('--enable-sse')
else:
args.append('--disable-sse')
if '~python' in self.spec:
args.append('--without-python')
else:
args.append('--with-python')
if '~perl' in self.spec:
args.append('--without-perl')
else:
args.append('--with-perl')
if 'python@3:' in self.spec:
args.append('--with-python3')
return args
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