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author | Pariksheet Nanda <pnanda@umich.edu> | 2023-04-20 21:53:39 -0400 |
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committer | GitHub <noreply@github.com> | 2023-04-20 18:53:39 -0700 |
commit | 0b606b01dc6efbf005c90d81f0d34671df2a3cae (patch) | |
tree | f092d1ed9d14c798acfb736ced52bdfc5de2aa9e /.readthedocs.yml | |
parent | 134b954c7f7863b33cd76a14e1dbd5976f24da3c (diff) | |
download | spack-0b606b01dc6efbf005c90d81f0d34671df2a3cae.tar.gz spack-0b606b01dc6efbf005c90d81f0d34671df2a3cae.tar.bz2 spack-0b606b01dc6efbf005c90d81f0d34671df2a3cae.tar.xz spack-0b606b01dc6efbf005c90d81f0d34671df2a3cae.zip |
uqtk: bump (#36670)
1. support version 3.1.3, which now depends on sundials@6
2. support version 3.1.2:, which broke the two patch files and
therefore the two patch files have been replaced by more flexible
filter_file() commands inside a patch() function.
3. rename the variant for python extension from using the package name
"+pyuqtk" to the more standard "+python"
4. add maintainers @omsai and the upstream developer @bjdebus who
offered to help with the spack packaging.
5. swig should only be a build-time dependency. swig is only
necessary until @:3.1.0
6. confirmed python dependencies are correct by inspecting imports,
subset python dependencies type to build, run, and confirmed all
31 build-time tests pass including the 9 python tests:
```console
$ spack env create uqtk-dev
$ spack add uqtk@3.1.3
$ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt
==> Testing package uqtk-3.1.3-nok6fut
==> [2023-04-19-14:56:25.005361] Running build-time tests
==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check]
==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test'
==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test'
Running tests...
/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process
Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut
Start 1: ArrayReadAndWrite
Start 2: ArrayDelColumn
Start 3: Array1DMiscTest
Start 4: Array2DMiscTest
1/31 Test #1: ArrayReadAndWrite ................ Passed 0.01 sec
Start 5: ArraySortTest
2/31 Test #2: ArrayDelColumn ................... Passed 0.01 sec
Start 6: MultiIndexTest
3/31 Test #3: Array1DMiscTest .................. Passed 0.01 sec
Start 7: CorrTest
4/31 Test #4: Array2DMiscTest .................. Passed 0.01 sec
Start 8: QuadLUTest
5/31 Test #5: ArraySortTest .................... Passed 0.02 sec
Start 9: MCMC2dTest
6/31 Test #6: MultiIndexTest ................... Passed 0.01 sec
Start 10: MCMCRandomTest
7/31 Test #8: QuadLUTest ....................... Passed 0.02 sec
Start 11: MCMCNestedTest
8/31 Test #10: MCMCRandomTest ................... Passed 0.02 sec
Start 12: Deriv1dTest
9/31 Test #12: Deriv1dTest ...................... Passed 0.01 sec
Start 13: SecondDeriv1dTest
10/31 Test #13: SecondDeriv1dTest ................ Passed 0.01 sec
Start 14: GradHessianTest
11/31 Test #11: MCMCNestedTest ................... Passed 0.03 sec
Start 15: GradientPCETest
12/31 Test #14: GradHessianTest .................. Passed 0.01 sec
Start 16: PCE1dTest
13/31 Test #15: GradientPCETest .................. Passed 0.01 sec
Start 17: PCEImplTest
14/31 Test #16: PCE1dTest ........................ Passed 0.01 sec
Start 18: PCELogTest
15/31 Test #18: PCELogTest ....................... Passed 0.01 sec
Start 19: Hessian2dTest
16/31 Test #19: Hessian2dTest .................... Passed 0.01 sec
Start 20: BCS1dTest
17/31 Test #20: BCS1dTest ........................ Passed 0.01 sec
Start 21: BCS2dTest
18/31 Test #21: BCS2dTest ........................ Passed 0.01 sec
Start 22: LowRankRegrTest
19/31 Test #22: LowRankRegrTest .................. Passed 0.01 sec
Start 23: PyModTest
20/31 Test #17: PCEImplTest ...................... Passed 0.07 sec
Start 24: PyArrayTest
21/31 Test #23: PyModTest ........................ Passed 0.08 sec
Start 25: PyArrayTest2
22/31 Test #25: PyArrayTest2 ..................... Passed 0.30 sec
Start 26: PyQuadTest
23/31 Test #24: PyArrayTest ...................... Passed 1.44 sec
Start 27: PyBCSTest1D
24/31 Test #26: PyQuadTest ....................... Passed 1.68 sec
Start 28: PyBCSTest2D
25/31 Test #27: PyBCSTest1D ...................... Passed 1.66 sec
Start 29: PyBADPTest
26/31 Test #7: CorrTest ......................... Passed 3.43 sec
Start 30: PyRegressionTest
27/31 Test #28: PyBCSTest2D ...................... Passed 1.50 sec
Start 31: PyGalerkinTest
28/31 Test #9: MCMC2dTest ....................... Passed 3.90 sec
29/31 Test #29: PyBADPTest ....................... Passed 1.66 sec
30/31 Test #30: PyRegressionTest ................. Passed 1.72 sec
31/31 Test #31: PyGalerkinTest ................... Passed 1.63 sec
100% tests passed, 0 tests failed out of 31
Total Test time (real) = 5.35 sec
==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check'
==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile
```
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