py-dipy: add new package (#26331)

1 files changed, 38 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-dipy/package.py b/var/spack/repos/builtin/packages/py-dipy/package.py
new file mode 100644
index 0000000000..6f66af3ce8
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-dipy/package.py
@@ -0,0 +1,38 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyDipy(PythonPackage):
+    """ Diffusion MRI utilities in python.
+
+    DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic
+    methods for spatial normalization, signal processing, machine learning,
+    statistical analysis and visualization of medical images. Additionally, it
+    contains specialized methods for computational anatomy including diffusion,
+    perfusion and structural imaging.
+    """
+
+    homepage = "https://dipy.org/"
+    pypi     = "dipy/dipy-1.4.1.tar.gz"
+
+    version('1.4.1', sha256='b4bf830feae751f3f985d54cb71031fc35cea612838320f1f74246692b8a3cc0')
+
+    depends_on('python@3.6:', type=('build', 'run'))
+    depends_on('py-setuptools', type='build')
+    depends_on('py-cython@0.29:', type=('build'))
+    depends_on('py-numpy@1.12.0:', type=('build', 'run'))
+    depends_on('py-scipy@1.0:', type=('build', 'run'))
+    depends_on('py-nibabel@3.0.0:', type=('build', 'run'))
+    depends_on('py-h5py@2.5.0:', type=('build', 'run'))
+    depends_on('py-packaging@19.0:', type=('build', 'run'))
+    depends_on('py-tqdm@4.30.0:', type=('build', 'run'))
+
+    # Prevent passing --single-version-externally-managed to
+    # setup.py, to avoid
+    #     error: option --single-version-externally-managed not recognized
+    def install_args(self, spec, prefix):
+        return ['--prefix={0}'.format(prefix), '--root=/']