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| author | George Young <A-N-Other@users.noreply.github.com> | 2024-05-21 02:08:57 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-05-20 18:08:57 -0700 |
| commit | 900bd2f477b618620b2c776b91a2e57d0e4555f7 (patch) | |
| tree | 3516afd3280ba27ceb91f6c118682a77918671cd | |
| parent | 29d4a5af44b09ef23e866d38e8015400ea1d7fd9 (diff) | |
| download | spack-900bd2f477b618620b2c776b91a2e57d0e4555f7.tar.gz spack-900bd2f477b618620b2c776b91a2e57d0e4555f7.tar.bz2 spack-900bd2f477b618620b2c776b91a2e57d0e4555f7.tar.xz spack-900bd2f477b618620b2c776b91a2e57d0e4555f7.zip | |
seqkit: add 2.4.0, switching to 'go build' install mechanic (#38192)
* seqkit: add 2.4.0
* seqkit: add 2.4.0, switching to 'go build' install mechanic
* seqkit: add 2.4.0, switching to 'go build' install mechanic
* seqkit: update to @2.6.1, drop deprecated version and build system
* seqkit: add @2.7.0, convert to GoPackage
* tidying
* tidying
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
| -rw-r--r-- | var/spack/repos/builtin/packages/seqkit/package.py | 28 |
1 files changed, 17 insertions, 11 deletions
diff --git a/var/spack/repos/builtin/packages/seqkit/package.py b/var/spack/repos/builtin/packages/seqkit/package.py index 05a2d6ed00..238e3e735c 100644 --- a/var/spack/repos/builtin/packages/seqkit/package.py +++ b/var/spack/repos/builtin/packages/seqkit/package.py @@ -6,17 +6,23 @@ from spack.package import * -class Seqkit(Package): - """A cross-platform and ultrafast toolkit for FASTA/Q file manipulation - in Golang.""" +class GoBuilder(spack.build_systems.go.GoBuilder): + @property + def build_directory(self): + return join_path(self.pkg.stage.source_path, "seqkit") - homepage = "https://bioinf.shenwei.me/seqkit" - url = ( - "https://github.com/shenwei356/seqkit/releases/download/v0.10.1/seqkit_linux_amd64.tar.gz" - ) - version("0.10.1", sha256="82f1c86dc4bd196403a56c2bf3ec063e5674a71777e68d940c4cc3d8411d2e9d") +class Seqkit(GoPackage): + """seqkit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation""" - def install(self, spec, prefix): - mkdir(prefix.bin) - install("seqkit", prefix.bin) + homepage = "https://bioinf.shenwei.me/seqkit/" + url = "https://github.com/shenwei356/seqkit/archive/refs/tags/v2.4.0.tar.gz" + + license("MIT", checked_by="A-N-Other") + + version("2.7.0", sha256="b5c723ffd4640659860fc70a71c218d8f53bea0eae571cecc98eff04c7291e02") + version("2.6.1", sha256="d88249bd3b630c908ebd308abaa9cd7acb7a781c12bab877d3daaab56f43c443") + version("2.5.1", sha256="76d105921f918be20e616fbb607fe0fb2db603535a254ec0f853cb36bef817da") + version("2.4.0", sha256="c319f3d5feb7c99309e654042432959f01bbc5f7e4c71f55dc9854df46c73c7f") + + depends_on("go@1.17:", type="build") |