DeNovoGear: Create new package (#6699)

1 files changed, 43 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/denovogear/package.py b/var/spack/repos/builtin/packages/denovogear/package.py
new file mode 100644
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--- /dev/null
+++ b/var/spack/repos/builtin/packages/denovogear/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Denovogear(CMakePackage):
+    """DeNovoGear is a software package to detect de novo mutations using
+    next-generation sequencing data. It supports the analysis of many
+    differential experimental designs and uses advanced statistical models
+    to reduce the false positve rate."""
+
+    homepage = "https://github.com/denovogear/denovogear"
+    url      = "https://github.com/denovogear/denovogear/archive/v1.1.1.tar.gz"
+
+    version('1.1.1', 'da30e46851c3a774653e57f98fe62e5f')
+    version('1.1.0', '7d441d56462efb7ff5d3a6f6bddfd8b9')
+
+    depends_on('cmake@3.1:', type=('build'))
+    depends_on('boost@1.47:1.60', type=('build'))
+    depends_on('htslib@1.2:', type=('build'))
+    depends_on('eigen', type=('build'))