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authorketsubouchi <kenta.tsubouchi@hac-inc.co.jp>2020-08-20 16:55:05 +0900
committerGitHub <noreply@github.com>2020-08-20 09:55:05 +0200
commit8a02ef4d51a08ed8bcdd97e971e514a5af75c5cb (patch)
treecb18287d237abecfe1db897fa9b2fdbfe4250503
parentc786eb46bb3e79574db1a6f08f7718b7a872b3ad (diff)
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bwa: patch Makefile to permit the use of compilers other than GCC (#18189)
-rw-r--r--var/spack/repos/builtin/packages/bwa/package.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bwa/package.py b/var/spack/repos/builtin/packages/bwa/package.py
index 5f2d3ff178..266ac915e3 100644
--- a/var/spack/repos/builtin/packages/bwa/package.py
+++ b/var/spack/repos/builtin/packages/bwa/package.py
@@ -36,6 +36,8 @@ class Bwa(Package):
zlib_inc_path, 'Makefile')
filter_file(r'^LIBS=', "LIBS=-L%s " % spec['zlib'].prefix.lib,
'Makefile')
+ # use spack C compiler
+ filter_file('^CC=.*', 'CC={0}'.format(spack_cc), 'Makefile')
make()
mkdirp(prefix.bin)