r-goplot: new package (#8942)

1 files changed, 49 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-goplot/package.py b/var/spack/repos/builtin/packages/r-goplot/package.py
new file mode 100644
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+++ b/var/spack/repos/builtin/packages/r-goplot/package.py
@@ -0,0 +1,49 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RGoplot(RPackage):
+    """Implementation of multilayered visualizations for enhanced graphical
+       representation of functional analysis data. It combines and integrates
+       omics data derived from expression and functional annotation enrichment
+       analyses. Its plotting functions have been developed with an
+       hierarchical structure in mind: starting from a general overview to
+       identify the most enriched categories (modified bar plot, bubble plot)
+       to a more detailed one displaying different types of relevant
+       information for the molecules in a given set of categories
+       (circle plot, chord plot, cluster plot, Venn diagram, heatmap)."""
+
+    homepage = "https://github.com/wencke/wencke.github.io/issues"
+    url      = "https://cran.r-project.org/src/contrib/GOplot_1.0.2.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/GOplot"
+
+    version('1.0.2', sha256='3ddaa2b6d1297ad6daad30d18af708adf43d86e8804b1b92fa29dfbf26d80df9')
+
+    depends_on('r@3.2.3:', type=('build', 'run'))
+    depends_on('r-ggplot2@2.0.0:', type=('build', 'run'))
+    depends_on('r-ggdendro@0.1-17:', type=('build', 'run'))
+    depends_on('r-gridextra@2.0.0:', type=('build', 'run'))
+    depends_on('r-rcolorbrewer@1.1.2:', type=('build', 'run'))