pcma: new package (#4793)

1 files changed, 43 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/pcma/package.py b/var/spack/repos/builtin/packages/pcma/package.py
new file mode 100644
index 0000000000..944c1ac37b
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pcma/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Pcma(MakefilePackage):
+    """PCMA is a progressive multiple sequence alignment program that combines
+       two different alignment strategies."""
+
+    homepage = "http://prodata.swmed.edu/pcma/pcma.php"
+    url      = "http://prodata.swmed.edu/download/pub/PCMA/pcma.tar.gz"
+
+    version('2.0', 'e78449b2f6b0e90348a0a6747d266f9b')
+
+    def edit(self, spec, prefix):
+        makefile = FileFilter('makefile')
+        makefile.filter('gcc', spack_cc)
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install('pcma', prefix.bin)