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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2021-04-23 09:28:24 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-04-23 16:28:24 +0200 |
| commit | 0c56b598774da4ebc6ab4f5451b052927ef00d21 (patch) | |
| tree | 205e9a28b475082533ac466c0b5d32fa154419b7 | |
| parent | bcea5e7ba48f91f6dd6eb1c02665ad09402107cd (diff) | |
| download | spack-0c56b598774da4ebc6ab4f5451b052927ef00d21.tar.gz spack-0c56b598774da4ebc6ab4f5451b052927ef00d21.tar.bz2 spack-0c56b598774da4ebc6ab4f5451b052927ef00d21.tar.xz spack-0c56b598774da4ebc6ab4f5451b052927ef00d21.zip | |
r-dmrcate: new package (#23151)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-dmrcate/package.py | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dmrcate/package.py b/var/spack/repos/builtin/packages/r-dmrcate/package.py new file mode 100644 index 0000000000..5f04590e15 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dmrcate/package.py @@ -0,0 +1,36 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RDmrcate(RPackage): + """Methylation array and sequencing spatial analysis methods: + + De novo identification and extraction of differentially methylated regions + (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) + and Illumina Infinium Array (450K and EPIC) data. Provides functionality + for filtering probes possibly confounded by SNPs and cross-hybridisation. + Includes GRanges generation and plotting functions.""" + + bioc = "DMRcate" + + version('2.4.1', commit='bc6242a0291a9b997872f575a4417d38550c9550') + + depends_on('r@3.6.0:', type=('build', 'run')) + depends_on('r-minfi', type=('build', 'run')) + depends_on('r-summarizedexperiment', type=('build', 'run')) + depends_on('r-experimenthub', type=('build', 'run')) + depends_on('r-bsseq', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-limma', type=('build', 'run')) + depends_on('r-edger', type=('build', 'run')) + depends_on('r-dss', type=('build', 'run')) + depends_on('r-missmethyl', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-gviz', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) |