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authorAndrew W Elble <aweits@rit.edu>2020-10-19 14:15:49 -0400
committerGitHub <noreply@github.com>2020-10-19 13:15:49 -0500
commit0df70e217ff5f602f1fd3e3c06a6ac3fd6783d02 (patch)
tree1fe9119c7d001bb8725739c31fde4778292f4a2e
parent9cd2ab48abdbb1df910e7249da65b7809a38cb44 (diff)
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A collection of tensorflow fixes and updates (#19371)
* A collection of tensorflow fixes and updates * tensorflow 2.3.1 requires the workaround for external protobuf as well * Update tensorflow-estimator to 2.3.0 * Update tensorboard to 2.3.0 * Update tensorboard-plugin-wit to use actual releases * Patch that potentially fixes #16073 * add myself to maintainer list
-rw-r--r--var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/package.py13
-rw-r--r--var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/tboard_shellenv.patch31
-rw-r--r--var/spack/repos/builtin/packages/py-tensorboard/package.py30
-rw-r--r--var/spack/repos/builtin/packages/py-tensorboard/tboard_shellenv.patch12
-rw-r--r--var/spack/repos/builtin/packages/py-tensorflow-estimator/package.py11
-rw-r--r--var/spack/repos/builtin/packages/py-tensorflow/package.py4
6 files changed, 93 insertions, 8 deletions
diff --git a/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/package.py b/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/package.py
index bb56b8c7d6..53f4130e98 100644
--- a/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/package.py
+++ b/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/package.py
@@ -14,9 +14,14 @@ class PyTensorboardPluginWit(Package):
that requires minimal code."""
homepage = "https://pypi.python.org/project/tensorboard-plugin-wit"
+ url = "https://github.com/PAIR-code/what-if-tool/archive/v1.7.0.tar.gz"
git = "https://github.com/pair-code/what-if-tool.git"
+ maintainers = ['aweits']
+
version('master', branch='master')
+ version('1.7.0', sha256='30dcab9065b02c3f1476f4fb92b27f6feb6c00cdb281699c44d8e69c86745247')
+
depends_on('bazel@0.26.1:', type='build')
depends_on('py-setuptools@36.2.0:', type='build')
depends_on('python@2.7:2.8,3.2:', type=('build', 'run'))
@@ -24,6 +29,8 @@ class PyTensorboardPluginWit(Package):
extends('python')
+ patch('tboard_shellenv.patch')
+
phases = ['setup', 'build', 'install']
def setup_build_environment(self, env):
@@ -38,13 +45,13 @@ class PyTensorboardPluginWit(Package):
'dest="{0}"'.format(builddir),
'tensorboard_plugin_wit/pip_package/build_pip_package.sh')
filter_file(r'pip install .*',
- ''.format(builddir),
+ '',
'tensorboard_plugin_wit/pip_package/build_pip_package.sh')
filter_file(r'command \-v .*',
- ''.format(builddir),
+ '',
'tensorboard_plugin_wit/pip_package/build_pip_package.sh')
filter_file(r'virtualenv venv',
- ''.format(builddir),
+ '',
'tensorboard_plugin_wit/pip_package/build_pip_package.sh')
def build(self, spec, prefix):
diff --git a/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/tboard_shellenv.patch b/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/tboard_shellenv.patch
new file mode 100644
index 0000000000..6b94dd8932
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-tensorboard-plugin-wit/tboard_shellenv.patch
@@ -0,0 +1,31 @@
+diff --git a/WORKSPACE b/WORKSPACE
+index 48227b5d8439..5ce04e1097eb 100644
+--- a/WORKSPACE
++++ b/WORKSPACE
+@@ -97,6 +97,8 @@ http_archive(
+ name = "org_tensorflow_tensorboard",
+ sha256 = "528afecdcc551c31baa6c7c3f702439cb6a52b711a12f9773177d0a9221f0620",
+ strip_prefix = "tensorboard-22b1f7413a917249245ab63a33d1f03514039294",
++ patch_args = ["-p1"],
++ patches = ["defaultshellenv.patch"],
+ urls = [
+ "https://github.com/tensorflow/tensorboard/archive/22b1f7413a917249245ab63a33d1f03514039294.tar.gz", # 2019-12-04
+ ],
+diff --git a/external/defaultshellenv.patch b/external/defaultshellenv.patch
+new file mode 100644
+index 000000000000..d22faf5662b6
+--- /dev/null
++++ b/external/defaultshellenv.patch
+@@ -0,0 +1,12 @@
++diff --git a/tensorboard/defs/web.bzl b/tensorboard/defs/web.bzl
++index dfca0bfd21b5..fb981493b25d 100644
++--- a/tensorboard/defs/web.bzl
+++++ b/tensorboard/defs/web.bzl
++@@ -180,6 +180,7 @@ def _tf_web_library(ctx):
++ tools=ctx.files._tsc,
++ inputs=ts_inputs,
++ outputs=ts_outputs,
+++ use_default_shell_env=True,
++ executable=ctx.executable._execrooter,
++ arguments=(
++ [er_config.path] +
diff --git a/var/spack/repos/builtin/packages/py-tensorboard/package.py b/var/spack/repos/builtin/packages/py-tensorboard/package.py
index 251f759b5f..3ce199fb6f 100644
--- a/var/spack/repos/builtin/packages/py-tensorboard/package.py
+++ b/var/spack/repos/builtin/packages/py-tensorboard/package.py
@@ -12,6 +12,9 @@ class PyTensorboard(Package):
homepage = "https://pypi.python.org/project/tensorboard"
url = "https://github.com/tensorflow/tensorboard/archive/2.2.0.tar.gz"
+ maintainers = ['aweits']
+
+ version('2.3.0', sha256='947a58702c2841eb4559637dbf8639633f79de9a0f422be9737f3563a1725440')
version('2.2.0', sha256='d0dfbf0e4b3b5ebbc3fafa6d281d4b9aa5478eac6bac3330652ab6674278ab77')
depends_on('python@2.7:2.8,3.2:', type=('build', 'run'))
@@ -21,7 +24,8 @@ class PyTensorboard(Package):
depends_on('py-markdown@2.6.8:', type=('build', 'run'))
depends_on('py-requests@2.21.0:2.999', type=('build', 'run'))
depends_on('py-futures@3.1.1:', type=('build', 'run'), when='^python@:2')
- depends_on('py-grpcio@1.23.3:', type=('build', 'run'))
+ depends_on('py-grpcio@1.24.3:', type=('build', 'run'), when='@2.3.0')
+ depends_on('py-grpcio@1.23.3:', type=('build', 'run'), when='@2.2.0')
depends_on('py-google-auth@1.6.3:1.99.99', type=('build', 'run'))
depends_on('py-numpy@1.12.0:', type=('build', 'run'))
depends_on('py-protobuf@3.6.0:', type=('build', 'run'))
@@ -31,12 +35,23 @@ class PyTensorboard(Package):
depends_on('py-wheel@0.26:', type='build', when='@0.6: ^python@3:')
depends_on('py-google-auth-oauthlib@0.4.1:0.4.999', type=('build', 'run'))
depends_on('py-tensorboard-plugin-wit@1.6.0:', type=('build', 'run'), when='@2.2.0:')
- depends_on('py-tensorflow-estimator', type='run')
+ depends_on('py-tensorflow-estimator@2.2.0', type='run', when='@2.2.0')
+ depends_on('py-tensorflow-estimator@2.3.0', type='run', when='@2.3.0')
extends('python')
+ patch('tboard_shellenv.patch')
+
phases = ['configure', 'build', 'install']
+ def patch(self):
+ filter_file('build --define=angular_ivy_enabled=True',
+ 'build --define=angular_ivy_enabled=True\n'
+ 'build --distinct_host_configuration=false\n'
+ 'build --action_env=PYTHONPATH="{0}"\n'.format(
+ env['PYTHONPATH']),
+ '.bazelrc')
+
def setup_build_environment(self, env):
tmp_path = '/tmp/spack/tb'
mkdirp(tmp_path)
@@ -48,6 +63,15 @@ class PyTensorboard(Package):
filter_file(r'workdir=.*',
'workdir="{0}"'.format(builddir),
'tensorboard/pip_package/build_pip_package.sh')
+ filter_file(r'pip install .*',
+ '',
+ 'tensorboard/pip_package/build_pip_package.sh')
+ filter_file(r'command \-v .*',
+ '',
+ 'tensorboard/pip_package/build_pip_package.sh')
+ filter_file(r'virtualenv .*',
+ '',
+ 'tensorboard/pip_package/build_pip_package.sh')
filter_file('trap cleanup EXIT',
'',
'tensorboard/pip_package/build_pip_package.sh')
@@ -59,6 +83,8 @@ class PyTensorboard(Package):
'--output_user_root=' + tmp_path,
'build',
'--verbose_failures',
+ '--spawn_strategy=local',
+ '--subcommands=pretty_print',
'//tensorboard/pip_package')
def install(self, spec, prefix):
diff --git a/var/spack/repos/builtin/packages/py-tensorboard/tboard_shellenv.patch b/var/spack/repos/builtin/packages/py-tensorboard/tboard_shellenv.patch
new file mode 100644
index 0000000000..d22faf5662
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-tensorboard/tboard_shellenv.patch
@@ -0,0 +1,12 @@
+diff --git a/tensorboard/defs/web.bzl b/tensorboard/defs/web.bzl
+index dfca0bfd21b5..fb981493b25d 100644
+--- a/tensorboard/defs/web.bzl
++++ b/tensorboard/defs/web.bzl
+@@ -180,6 +180,7 @@ def _tf_web_library(ctx):
+ tools=ctx.files._tsc,
+ inputs=ts_inputs,
+ outputs=ts_outputs,
++ use_default_shell_env=True,
+ executable=ctx.executable._execrooter,
+ arguments=(
+ [er_config.path] +
diff --git a/var/spack/repos/builtin/packages/py-tensorflow-estimator/package.py b/var/spack/repos/builtin/packages/py-tensorflow-estimator/package.py
index 055d80724b..cf227eec27 100644
--- a/var/spack/repos/builtin/packages/py-tensorflow-estimator/package.py
+++ b/var/spack/repos/builtin/packages/py-tensorflow-estimator/package.py
@@ -13,6 +13,9 @@ class PyTensorflowEstimator(Package):
homepage = "https://github.com/tensorflow/estimator"
url = "https://github.com/tensorflow/estimator/archive/v2.2.0.tar.gz"
+ maintainers = ['aweits']
+
+ version('2.3.0', sha256='75403e7de7e8ec30ec0781ede56ed84cbe5e90daad64a9c242cd489c8fe63a17')
version('2.2.0', sha256='2d68cb6e6442e7dcbfa2e092aa25bdcb0eda420536a829b85d732854a4c85d46')
version('2.1', sha256='1d74c8181b981748976fa33ad97d3434c3cf2b7e29a0b00861365fe8329dbc4e')
version('2.0.0', sha256='6f4bdf1ab219e1f1cba25d2af097dc820f56479f12a839853d97422fe4d8b465')
@@ -20,11 +23,17 @@ class PyTensorflowEstimator(Package):
extends('python')
- depends_on('py-tensorflow@2.2.0:', when='@2.2.0')
+ depends_on('py-tensorflow@2.3.0:', when='@2.3.0')
+ depends_on('py-tensorflow@2.2.0', when='@2.2.0')
depends_on('py-tensorflow@2.1.0:2.1.999', when='@2.1')
depends_on('py-tensorflow@2.0.0:2.0.999', when='@2.0.0')
depends_on('py-tensorflow@1.13.1', when='@1.13.0')
+ depends_on('py-absl-py@0.7.0:', type=('build', 'run'), when='@1.12.1,1.14:')
+ depends_on('py-numpy@1.16.0:1.18', type=('build', 'run'), when='@1.13.2,1.15:')
+ depends_on('py-six@1.12.0:', type=('build', 'run'), when='@2.1:')
+ depends_on('py-keras-preprocessing@1.1.1:1.999', type=('build', 'run'), when='@2.3:')
+
depends_on('bazel@0.19.0:', type='build')
depends_on('py-funcsigs@1.0.2:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-tensorflow/package.py b/var/spack/repos/builtin/packages/py-tensorflow/package.py
index 3de5f48830..a5c285fa01 100644
--- a/var/spack/repos/builtin/packages/py-tensorflow/package.py
+++ b/var/spack/repos/builtin/packages/py-tensorflow/package.py
@@ -13,7 +13,7 @@ class PyTensorflow(Package, CudaPackage):
homepage = "https://www.tensorflow.org"
url = "https://github.com/tensorflow/tensorflow/archive/v2.3.1.tar.gz"
- maintainers = ['adamjstewart']
+ maintainers = ['adamjstewart', 'aweits']
import_modules = ['tensorflow']
version('2.3.1', sha256='ee534dd31a811f7a759453567257d1e643f216d8d55a25c32d2fbfff8153a1ac')
@@ -533,7 +533,7 @@ class PyTensorflow(Package, CudaPackage):
env.set('INCLUDEDIR', spec['protobuf'].prefix.include)
def patch(self):
- if self.spec.satisfies('@2.3.0'):
+ if self.spec.satisfies('@2.3.0:2.3.1'):
filter_file('deps = protodeps + well_known_proto_libs(),',
'deps = protodeps,',
'tensorflow/core/platform/default/build_config.bzl',