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| author | George Young <A-N-Other@users.noreply.github.com> | 2024-03-18 13:08:32 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-03-18 07:08:32 -0600 |
| commit | 12adf66d07161ed45109ccb95381f4217942c1c5 (patch) | |
| tree | 8f5c8db94690aa2ba1a36c507e39aaf0295f76ed | |
| parent | c02f58da8fa09c67316f5dc078c2d1ce901417f5 (diff) | |
| download | spack-12adf66d07161ed45109ccb95381f4217942c1c5.tar.gz spack-12adf66d07161ed45109ccb95381f4217942c1c5.tar.bz2 spack-12adf66d07161ed45109ccb95381f4217942c1c5.tar.xz spack-12adf66d07161ed45109ccb95381f4217942c1c5.zip | |
telocal: add new package (#43241)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
| -rw-r--r-- | var/spack/repos/builtin/packages/telocal/package.py | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/telocal/package.py b/var/spack/repos/builtin/packages/telocal/package.py new file mode 100644 index 0000000000..2b7e9437b4 --- /dev/null +++ b/var/spack/repos/builtin/packages/telocal/package.py @@ -0,0 +1,21 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Telocal(PythonPackage): + """A package for quantifying transposable elements at a locus level for RNAseq datasets""" + + homepage = "https://hammelllab.labsites.cshl.edu/software/#TElocal" + + url = "https://github.com/mhammell-laboratory/TElocal/archive/refs/tags/1.1.2.tar.gz" + + license("GPL-3.0-only", checked_by="A_N_Other") + + version("1.1.2", sha256="d0c7d419d7df06dedbdffbf316fe01fa7324994e0fe1c4ea721835ec9b3e9bb5") + + depends_on("py-setuptools", type="build") + depends_on("py-pysam@0.9:", type=("build", "run")) |