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| author | Justin Stanley <molecuul@users.noreply.github.com> | 2019-03-01 10:14:37 -0600 |
|---|---|---|
| committer | Levi Baber <baberlevi@gmail.com> | 2019-03-01 10:14:37 -0600 |
| commit | 165d8da0c2e5a862c1576f753229be7a2ed0aea5 (patch) | |
| tree | 7e742aceb6faff5ea87c0f4d024a538c2d51caf6 | |
| parent | f9947333ca99cadebe98b39236e7eaa542d3ee42 (diff) | |
| download | spack-165d8da0c2e5a862c1576f753229be7a2ed0aea5.tar.gz spack-165d8da0c2e5a862c1576f753229be7a2ed0aea5.tar.bz2 spack-165d8da0c2e5a862c1576f753229be7a2ed0aea5.tar.xz spack-165d8da0c2e5a862c1576f753229be7a2ed0aea5.zip | |
blast-legacy: new package at 2.2.26 (#10610)
* blast-legacy: new package at 2.2.26
* blast-legacy: compile from source
* blast-legacy: add missing os.symlink import
* blast-legacy: fix build script interpreter
| -rw-r--r-- | var/spack/repos/builtin/packages/blast-legacy/package.py | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/blast-legacy/package.py b/var/spack/repos/builtin/packages/blast-legacy/package.py new file mode 100644 index 0000000000..ed4d10e15d --- /dev/null +++ b/var/spack/repos/builtin/packages/blast-legacy/package.py @@ -0,0 +1,35 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +from os import symlink + + +class BlastLegacy(Package): + """Legacy NCBI BLAST distribution -- no longer supported. + Contains older programs including `blastall'""" + + homepage = "https://www.ncbi.nlm.nih.gov/" + url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy.NOTSUPPORTED/2.2.26/ncbi.tar.gz" + + version('2.2.26', sha256='d8fffac25efc8ca894c707c840a4797a8a949ae6fd983d2f91c9972f788efb7d') + + depends_on('tcsh', type='build') + + def install(self, spec, prefix): + filter_file('/bin/csh -f', '/bin/env tcsh', 'make/ln-if-absent', + string=True) + + tcsh = which('tcsh') + with working_dir('..'): + tcsh('./ncbi/make/makedis.csh') + + # depends on local data in the source tree + install_path = join_path(prefix, 'usr/local/blast-legacy') + mkdirp(install_path) + install_tree('.', install_path) + + # symlink build output with binaries + symlink(join_path(install_path, 'build'), prefix.bin) |