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authorAdam J. Stewart <ajstewart426@gmail.com>2019-12-08 09:29:51 -0600
committerGitHub <noreply@github.com>2019-12-08 09:29:51 -0600
commit2266aab5c50958b2660fdf904a89e3b68c65c732 (patch)
treef1ed91ce0f3588ee1af9ddd94853174b48f5373a
parentc72568d01b9ceda21cd86c288ac1672c58cc34ec (diff)
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Add new r-condop package (#14050)
-rw-r--r--var/spack/repos/builtin/packages/r-condop/package.py32
1 files changed, 32 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-condop/package.py b/var/spack/repos/builtin/packages/r-condop/package.py
new file mode 100644
index 0000000000..5bbe0ccad6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-condop/package.py
@@ -0,0 +1,32 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RCondop(RPackage):
+ """CONDOP: Condition-Dependent Operon Predictions.
+
+ An implementation of the computational strategy for the comprehensive
+ analysis of condition-dependent operon maps in prokaryotes proposed by
+ Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq
+ transcriptome profiles to improve prokaryotic operon map inference."""
+
+ homepage = "https://cloud.r-project.org/package=CONDOP"
+ url = "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz"
+ list_url = "https://cloud.r-project.org/src/contrib/Archive/CONDOP"
+
+ version('1.0', sha256='3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a')
+
+ depends_on('r-mclust', type=('build', 'run'))
+ depends_on('r-earth', type=('build', 'run'))
+ depends_on('r-plyr', type=('build', 'run'))
+ depends_on('r-seqinr', type=('build', 'run'))
+ depends_on('r-randomforest', type=('build', 'run'))
+ depends_on('r-rminer', type=('build', 'run'))
+ depends_on('r-genomicranges', type=('build', 'run'))
+ depends_on('r-genomeinfodb', type=('build', 'run'))
+ depends_on('r-s4vectors', type=('build', 'run'))
+ depends_on('r-iranges', type=('build', 'run'))