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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-04 23:55:16 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-04 17:55:16 -0500 |
| commit | 3368a98210903b77ffef7a0d1ffb707cccf9caa5 (patch) | |
| tree | 8358aa0ceccfa43f0fd1968f658a653146294482 | |
| parent | 606b7c7f16fa2c63873755216362f82e8ac70948 (diff) | |
| download | spack-3368a98210903b77ffef7a0d1ffb707cccf9caa5.tar.gz spack-3368a98210903b77ffef7a0d1ffb707cccf9caa5.tar.bz2 spack-3368a98210903b77ffef7a0d1ffb707cccf9caa5.tar.xz spack-3368a98210903b77ffef7a0d1ffb707cccf9caa5.zip | |
py-htseq: add 2.0.3, switch to PyPI (#37935)
* py-htseq: add 0.12.3, switching over to new GitHub repo
* py-htseq: add 0.12.3, switching over to new GitHub repo
Style fixes
* py-htseq: add 2.0.3, switch to PyPI
* py-htseq: add 2.0.3, switch to PyPI
* Update package.py
* Update var/spack/repos/builtin/packages/py-htseq/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removing SWIG
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
| -rw-r--r-- | var/spack/repos/builtin/packages/py-htseq/package.py | 26 |
1 files changed, 19 insertions, 7 deletions
diff --git a/var/spack/repos/builtin/packages/py-htseq/package.py b/var/spack/repos/builtin/packages/py-htseq/package.py index 2fec5c544a..5049ed9b13 100644 --- a/var/spack/repos/builtin/packages/py-htseq/package.py +++ b/var/spack/repos/builtin/packages/py-htseq/package.py @@ -10,15 +10,27 @@ class PyHtseq(PythonPackage): """HTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays.""" - homepage = "https://htseq.readthedocs.io/en/release_0.9.1/overview.html" - url = "https://github.com/simon-anders/htseq/archive/release_0.9.1.tar.gz" + homepage = "https://htseq.readthedocs.io/en/master/index.html" + pypi = "HTSeq/HTSeq-2.0.3.tar.gz" - version("0.11.2", sha256="dfc707effa699d5ba9034e1bb9f13c0fb4e9bc60d31ede2444aa49c7e2fc71aa") - version("0.9.1", sha256="28b41d68aa233fce0d57699e649b69bb11957f8f1b9b7b82dfe3415849719534") + version("2.0.3", sha256="c7e7eb29bdc44e80d2d68e3599fa8a8f1d9d6475624dcf1b9644285a8a9c0fac") + version("0.11.2", sha256="65c4c13968506c7df92e97124df96fdd041c4476c12a548d67350ba8b436bcfc") + version("0.9.1", sha256="af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485") + variant("qa", default=True, description="Quality assessment") + variant("mtx", default=True, description="BigWig manipulation", when="@2:") + variant("mtx", default=True, description="mtx output files", when="@2:") + variant("h5ad", default=True, description="h5ad output files", when="@2:") + variant("loom", default=True, description="loom output files", when="@2:") + + # build-only dependencies depends_on("py-setuptools", type="build") + depends_on("py-cython@0.29.5:", type="build") + # run dependencies depends_on("py-numpy", type=("build", "run")) depends_on("py-pysam", type=("build", "run")) - depends_on("py-matplotlib", type=("build", "run")) - depends_on("py-cython", type=("build", "run")) - depends_on("swig", type=("build", "run")) + # variant dependencies + depends_on("py-matplotlib@1.4:", type=("build", "run"), when="+qa") + depends_on("py-scipy@1.5.0:", type=("build", "run"), when="+mtx") + depends_on("py-anndata", type=("build", "run"), when="+h5ad") + depends_on("py-loompy", type=("build", "run"), when="+loom") |