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author | George Young <A-N-Other@users.noreply.github.com> | 2023-08-03 00:11:18 +0100 |
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committer | GitHub <noreply@github.com> | 2023-08-02 19:11:18 -0400 |
commit | 41d2161b5b5a40e1912cd8deb81da331a5a25de9 (patch) | |
tree | 529c73c93c37d3c22966220fb2b868b5ca67d5eb | |
parent | ba936574fc8acf95a6a28e0438634b15d85af599 (diff) | |
download | spack-41d2161b5b5a40e1912cd8deb81da331a5a25de9.tar.gz spack-41d2161b5b5a40e1912cd8deb81da331a5a25de9.tar.bz2 spack-41d2161b5b5a40e1912cd8deb81da331a5a25de9.tar.xz spack-41d2161b5b5a40e1912cd8deb81da331a5a25de9.zip |
nextdenovo: new package @2.5.2 (and py-paralleltask) (#39139)
* py-paralleltask: new package @0.2.2
* adding hidden dependency
* nextdenovo: new package @2.5.2
* style
* Update var/spack/repos/builtin/packages/py-paralleltask/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
-rw-r--r-- | var/spack/repos/builtin/packages/nextdenovo/package.py | 29 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/py-paralleltask/package.py | 20 |
2 files changed, 49 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/nextdenovo/package.py b/var/spack/repos/builtin/packages/nextdenovo/package.py new file mode 100644 index 0000000000..51748f0e3a --- /dev/null +++ b/var/spack/repos/builtin/packages/nextdenovo/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Nextdenovo(MakefilePackage): + """NextDenovo is a string graph-based de novo assembler for long reads.""" + + homepage = "https://nextdenovo.readthedocs.io/en/latest/index.html" + url = "https://github.com/Nextomics/NextDenovo/archive/refs/tags/2.5.2.tar.gz" + + version("2.5.2", sha256="f1d07c9c362d850fd737c41e5b5be9d137b1ef3f1aec369dc73c637790611190") + + depends_on("python", type="run") + depends_on("py-paralleltask", type="run") + + def edit(self, spec, prefix): + makefile = FileFilter("Makefile") + makefile.filter(r"^TOP_DIR.*", "TOP_DIR={0}".format(self.build_directory)) + runfile = FileFilter("nextDenovo") + runfile.filter(r"^SCRIPT_PATH.*", "SCRIPT_PATH = '{0}'".format(prefix)) + + def install(self, spec, prefix): + install_tree("bin", prefix.bin) + install("nextDenovo", prefix.bin) + install_tree("lib", prefix.lib) diff --git a/var/spack/repos/builtin/packages/py-paralleltask/package.py b/var/spack/repos/builtin/packages/py-paralleltask/package.py new file mode 100644 index 0000000000..53ce9066e9 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-paralleltask/package.py @@ -0,0 +1,20 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyParalleltask(PythonPackage): + """Paralleltask is a simple and lightweight parallel task engine. It can launch a given + number of tasks from a batch of independent tasks, and keep this number of running tasks + until all tasks are completed.""" + + homepage = "https://github.com/moold/ParallelTask" + pypi = "Paralleltask/Paralleltask-0.2.2.tar.gz" + + version("0.2.2", sha256="f00945e2bd5b6aff9cdc48fbd92aa7b48d23bb530d7f6643ac966fea11a7a9d5") + + depends_on("py-setuptools", type="build") + depends_on("py-psutil", type=("build", "run")) |