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| author | snehring <7978778+snehring@users.noreply.github.com> | 2024-06-04 12:21:54 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-06-04 10:21:54 -0700 |
| commit | 4442414d742aa674148cd896d7d743c81df36316 (patch) | |
| tree | c5d346116e47d27d98a71b5a3df40c958985327b | |
| parent | 8dbf9005f00d28a57df46804900cb9951bf96446 (diff) | |
| download | spack-4442414d742aa674148cd896d7d743c81df36316.tar.gz spack-4442414d742aa674148cd896d7d743c81df36316.tar.bz2 spack-4442414d742aa674148cd896d7d743c81df36316.tar.xz spack-4442414d742aa674148cd896d7d743c81df36316.zip | |
kallisto: add version 0.50.1 (#44544)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
| -rw-r--r-- | var/spack/repos/builtin/packages/kallisto/package.py | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/kallisto/package.py b/var/spack/repos/builtin/packages/kallisto/package.py index a0cba6850c..b1c88ef280 100644 --- a/var/spack/repos/builtin/packages/kallisto/package.py +++ b/var/spack/repos/builtin/packages/kallisto/package.py @@ -15,12 +15,14 @@ class Kallisto(CMakePackage): license("BSD-2-Clause") + version("0.50.1", sha256="030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34") version("0.48.0", sha256="1797ac4d1f0771e3f1f25dd7972bded735fcb43f853cf52184d3d9353a6269b0") version("0.46.2", sha256="c447ca8ddc40fcbd7d877d7c868bc8b72807aa8823a8a8d659e19bdd515baaf2") version("0.43.1", sha256="7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400") # HDF5 support is optional beginning with version 0.46.2. variant("hdf5", when="@0.46.2:", default=False, description="Build with HDF5 support") + variant("bam", when="@0.50.1:", default=False, description="Build with htslib support") depends_on("zlib-api") depends_on("hdf5", when="@:0.43") @@ -38,7 +40,7 @@ class Kallisto(CMakePackage): patch("link_zlib.patch", when="@:0.43") patch("limits.patch", when="@:0.46") - patch("htslib_configure.patch", when="@0.44.0:^autoconf@2.70:") + patch("htslib_configure.patch", when="@0.44.0:0.48.0^autoconf@2.70:") @run_before("cmake") def autoreconf(self): @@ -64,6 +66,8 @@ class Kallisto(CMakePackage): args = [i for i in a if i != "-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON"] if self.spec.satisfies("@0.46.2:"): args.append(self.define_from_variant("USE_HDF5", "hdf5")) + if self.spec.satisifes("@0.50.1:"): + args.append(self.define_from_variant("USE_BAM", "bam")) else: args = a |