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| author | Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> | 2024-08-07 02:43:23 -0700 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-08-07 11:43:23 +0200 |
| commit | 4584d85ca6048c5b4e8236bff2cabfe1439b1450 (patch) | |
| tree | dc797c17574f9b04091f71d7d48d06dc20056e52 | |
| parent | 2106a2be2634601fa7ab6f367bb8fd98253b0222 (diff) | |
| download | spack-4584d85ca6048c5b4e8236bff2cabfe1439b1450.tar.gz spack-4584d85ca6048c5b4e8236bff2cabfe1439b1450.tar.bz2 spack-4584d85ca6048c5b4e8236bff2cabfe1439b1450.tar.xz spack-4584d85ca6048c5b4e8236bff2cabfe1439b1450.zip | |
biobambam2: fix test scripts to use installed binaries (#45609)
| -rw-r--r-- | var/spack/repos/builtin/packages/biobambam2/package.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/biobambam2/package.py b/var/spack/repos/builtin/packages/biobambam2/package.py index c50f11c47a..1ea3a3a088 100644 --- a/var/spack/repos/builtin/packages/biobambam2/package.py +++ b/var/spack/repos/builtin/packages/biobambam2/package.py @@ -3,6 +3,8 @@ # # SPDX-License-Identifier: (Apache-2.0 OR MIT) +import os + from spack.package import * @@ -38,6 +40,12 @@ class Biobambam2(AutotoolsPackage): install test subdirectory for use during `spack test run`.""" self.cache_extra_test_sources(self.test_src_dir) + # Fix test scripts to run installed binaries + scripts_dir = join_path(install_test_root(self), self.test_src_dir) + for path in os.listdir(scripts_dir): + if path.endswith(".sh"): + filter_file(r"../src/", r"", join_path(scripts_dir, path)) + def test_short_sort(self): """run testshortsort.sh to check alignments sorted by coordinate""" test_dir = join_path(self.test_suite.current_test_cache_dir, self.test_src_dir) |