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authordownloadico <download@carc.unm.edu>2020-12-21 13:55:22 -0700
committerGitHub <noreply@github.com>2020-12-21 12:55:22 -0800
commit4654a8a557771d5e401adb39283ef58968e8c31c (patch)
treec644995f9e8fc828e96ed9aae8bea052b3216884
parent4a6269319e71185200ea74429bf3309f8e0d3528 (diff)
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New package: PMERGE (#20390)
-rw-r--r--var/spack/repos/builtin/packages/pmerge/package.py29
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pmerge/package.py b/var/spack/repos/builtin/packages/pmerge/package.py
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+++ b/var/spack/repos/builtin/packages/pmerge/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Pmerge(AutotoolsPackage):
+ """PMERGE implements a new method that identifies candidate PSVs by
+ building networks of loci that share high levels of nucleotide
+ similarity. The PMERGE is embedded in the analysis pipeline of the
+ widely used Stacks software, and it is straightforward to apply it as
+ an additional filter in population-genomic studies using RAD-seq
+ data."""
+
+ homepage = "https://github.com/beiko-lab/PMERGE"
+ git = "https://github.com/beiko-lab/PMERGE.git"
+
+ version('master', branch='master')
+
+ depends_on('automake@1.14:1.14.99', type='build')
+ depends_on('autoconf', type='build')
+ depends_on('m4', type='build')
+ depends_on('perl', type='build')
+
+ @property
+ def configure_directory(self):
+ return 'Install'