new package: py-weblogo (#7886)

3 files changed, 114 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/pdf2svg/package.py b/var/spack/repos/builtin/packages/pdf2svg/package.py
new file mode 100644
index 0000000000..40626e2700
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pdf2svg/package.py
@@ -0,0 +1,38 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Pdf2svg(AutotoolsPackage):
+    """A simple PDF to SVG converter using the Poppler and Cairo libraries."""
+
+    homepage = "http://www.cityinthesky.co.uk/opensource/pdf2svg"
+    url      = "https://github.com/dawbarton/pdf2svg/archive/v0.2.3.tar.gz"
+
+    version('0.2.3', 'd398b3b1c1979f554596238a44f12123')
+    version('0.2.2', 'f7e0d2213f9e1422cee9421e18f72553')
+
+    depends_on('cairo', type='run')
+    depends_on('poppler', type='run')
diff --git a/var/spack/repos/builtin/packages/poppler/package.py b/var/spack/repos/builtin/packages/poppler/package.py
new file mode 100644
index 0000000000..8a8f9d3cf9
--- /dev/null
+++ b/var/spack/repos/builtin/packages/poppler/package.py
@@ -0,0 +1,36 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Poppler(CMakePackage):
+    """Poppler is a PDF rendering library based on the xpdf-3.0 code base."""
+
+    homepage = "http://poppler.freedesktop.org"
+    url      = "https://poppler.freedesktop.org/poppler-0.64.0.tar.xz"
+
+    version('0.64.0', 'f7f687ebb60004f8ad61994575018044')
+
+    depends_on('openjpeg', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-weblogo/package.py b/var/spack/repos/builtin/packages/py-weblogo/package.py
new file mode 100644
index 0000000000..fd01da070c
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-weblogo/package.py
@@ -0,0 +1,40 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyWeblogo(PythonPackage):
+    """WebLogo is a web based application designed to make the generation of
+    sequence logos as easy and painless as possible."""
+
+    homepage = "http://weblogo.threeplusone.com"
+    url      = "https://pypi.io/packages/source/w/weblogo/weblogo-3.6.0.tar.gz"
+
+    version('3.6.0', 'd0764f218057543fa664d2ae17d37b6d')
+
+    depends_on('py-setuptools', type='build')
+    depends_on('ghostscript', type=('build', 'run'))
+    depends_on('pdf2svg', type=('build', 'run'))
+    depends_on('py-numpy', type=('build', 'run'))