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authorAudrey Thoma <las_thoma15@iastate.edu>2017-07-21 01:58:20 -0500
committerMassimiliano Culpo <massimiliano.culpo@googlemail.com>2017-07-21 08:58:20 +0200
commit7afce8d8cc27747934c218eff2a389a65f98e966 (patch)
tree6ca934977b6ec5710fc56288fd4f656c288f5e9f
parent78762628263015a901eccbcfd0b36626adf6aa91 (diff)
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satsuma2: new package (#4838)
-rw-r--r--var/spack/repos/builtin/packages/satsuma2/package.py41
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/satsuma2/package.py b/var/spack/repos/builtin/packages/satsuma2/package.py
new file mode 100644
index 0000000000..39abc714e0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/satsuma2/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Satsuma2(CMakePackage):
+ """Satsuma2 is an optimsed version of Satsuma, a tool to reliably align
+ large and complex DNA sequences providing maximum sensitivity (to find
+ all there is to find), specificity (to only find real homology) and
+ speed (to accomodate the billions of base pairs in vertebrate genomes).
+ """
+
+ homepage = "https://github.com/bioinfologics/satsuma2"
+ url = "https://github.com/bioinfologics/satsuma2"
+
+ version('2016-11-22', git='https://github.com/bioinfologics/satsuma2.git', commit='da694aeecf352e344b790bea4a7aaa529f5b69e6')
+
+ def install(self, spec, prefix):
+ install_tree(join_path('spack-build', 'bin'), prefix.bin)