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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-15 12:03:55 -0500 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@googlemail.com> | 2017-07-15 19:03:55 +0200 |
| commit | 7e32756fceec665199242830493bfd12d3c23458 (patch) | |
| tree | fe8d6e0af1c8dc477847fdfb817ff070ece781eb | |
| parent | 89ef576ba4e707eef653c670b32fa40d862e79ec (diff) | |
| download | spack-7e32756fceec665199242830493bfd12d3c23458.tar.gz spack-7e32756fceec665199242830493bfd12d3c23458.tar.bz2 spack-7e32756fceec665199242830493bfd12d3c23458.tar.xz spack-7e32756fceec665199242830493bfd12d3c23458.zip | |
orfm: new package (#4769)
| -rw-r--r-- | var/spack/repos/builtin/packages/orfm/package.py | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/orfm/package.py b/var/spack/repos/builtin/packages/orfm/package.py new file mode 100644 index 0000000000..11ff3c4c7b --- /dev/null +++ b/var/spack/repos/builtin/packages/orfm/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Orfm(AutotoolsPackage): + """A simple and not slow open reading frame (ORF) caller. No bells or + whistles like frameshift detection, just a straightforward goal of + returning a FASTA file of open reading frames over a certain length + from a FASTA/Q file of nucleotide sequences.""" + + homepage = "https://github.com/wwood/OrfM" + url = "https://github.com/wwood/OrfM/releases/download/v0.7.1/orfm-0.7.1.tar.gz" + + version('0.7.1', 'fcf18283a028cea2af90663a76a73a2a') |