r-mcmcglmm: new package (#5970)

2 files changed, 77 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-mcmcglmm/package.py b/var/spack/repos/builtin/packages/r-mcmcglmm/package.py
new file mode 100644
index 0000000000..fe87326629
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-mcmcglmm/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RMcmcglmm(RPackage):
+    """MCMC Generalised Linear Mixed Models."""
+
+    homepage = "https://cran.r-project.org/web/packages/MCMCglmm/index.html"
+    url      = "https://cran.r-project.org/src/contrib/MCMCglmm_2.25.tar.gz"
+
+    version('2.25', '260527ef6fecdd87f762fd07406d674a')
+
+    depends_on('r-matrix', type=('build', 'run'))
+    depends_on('r-coda', type=('build', 'run'))
+    depends_on('r-ape', type=('build', 'run'))
+    depends_on('r-corpcor', type=('build', 'run'))
+    depends_on('r-tensora', type=('build', 'run'))
+    depends_on('r-cubature', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/r-tensora/package.py b/var/spack/repos/builtin/packages/r-tensora/package.py
new file mode 100644
index 0000000000..b78f172501
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-tensora/package.py
@@ -0,0 +1,36 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RTensora(RPackage):
+    """The package provides convenience functions for advance linear algebra
+       with tensors and computation with datasets of tensors on a higher level
+       abstraction."""
+
+    homepage = "https://cran.r-project.org/web/packages/tensorA/index.html"
+    url      = "https://cran.r-project.org/src/contrib/tensorA_0.36.tar.gz"
+
+    version('0.36', '01c0613491d9b46600bf403d7e3bdd80')