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authorpeetsv <32349688+peetsv@users.noreply.github.com>2018-05-19 09:26:44 -0700
committerAdam J. Stewart <ajstewart426@gmail.com>2018-05-19 11:26:44 -0500
commit96aedae886b555013981dffbc366e22e08f1ae6c (patch)
treec48f970af965935d6be10cccb74475af8d64d938
parent2f5c4be3bfc6e759c265212063402e05cd5bf21f (diff)
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r-proc v1 12 1 - New package (#8191)
* py-pyfaidx: adding new package * updating the url * r-proc v1.12.1 new package * adding list_url
-rw-r--r--var/spack/repos/builtin/packages/r-proc/package.py44
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-proc/package.py b/var/spack/repos/builtin/packages/r-proc/package.py
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@@ -0,0 +1,44 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RProc(RPackage):
+ """Tools for visualizing, smoothing and comparing receiver operating
+ characteristic (ROC curves). (Partial) area under the curve (AUC)
+ can be compared with statistical tests based on U-statistics or
+ bootstrap. Confidence intervals can be computed for (p)AUC or
+ ROC curves."""
+
+ homepage = "https://web.expasy.org/pROC/"
+ url = "https://cran.r-project.org/src/contrib/pROC_1.12.1.tar.gz"
+ list_url = "https://cran.r-project.org/src/contrib/Archive/pROC"
+
+ version('1.12.1', 'ef5fb446fd75c1a3a5e7abf9b7aa4f75')
+
+ depends_on('r@2.14:', type=('build', 'run'))
+ depends_on('r-plyr', type=('build', 'run'))
+ depends_on('r-rcpp@0.11.1:', type=('build', 'run'))
+ depends_on('r-ggplot2', type=('build', 'run'))