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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-10-06 20:00:03 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-10-06 13:00:03 -0600 |
| commit | 98271c37121e97f09d4fb075aaaac1c4e30cd723 (patch) | |
| tree | c123d01c7cda48ba22ff5b11d845e5565ccf9e13 | |
| parent | e3f6df884e380daee27dea88ec2aec7aed991061 (diff) | |
| download | spack-98271c37121e97f09d4fb075aaaac1c4e30cd723.tar.gz spack-98271c37121e97f09d4fb075aaaac1c4e30cd723.tar.bz2 spack-98271c37121e97f09d4fb075aaaac1c4e30cd723.tar.xz spack-98271c37121e97f09d4fb075aaaac1c4e30cd723.zip | |
topaz: new package @0.2.5 (#40352)
* topaz: new package @0.2.5
* switching over to pypi
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
| -rw-r--r-- | var/spack/repos/builtin/packages/topaz/package.py | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/topaz/package.py b/var/spack/repos/builtin/packages/topaz/package.py new file mode 100644 index 0000000000..855cba4d6c --- /dev/null +++ b/var/spack/repos/builtin/packages/topaz/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Topaz(PythonPackage): + """topaz: Pipeline for particle picking in cryo-electron microscopy images using + convolutional neural networks trained from positive and unlabeled examples. Also + featuring micrograph and tomogram denoising with DNNs.""" + + homepage = "https://topaz-em.readthedocs.io/" + pypi = "topaz-em/topaz-em-0.2.5.tar.gz" + + version("0.2.5", sha256="002a6eb775598b6c4df0225f3a488bfe6a6da9246e8ca42eb4e7d58f694c25cc") + + depends_on("py-setuptools", type="build") + depends_on("py-torch@1:", type=("build", "run")) + depends_on("py-torchvision", type=("build", "run")) + depends_on("py-numpy@1.11:", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-scikit-learn@0.19.0:", type=("build", "run")) + depends_on("py-scipy@0.17.0:", type=("build", "run")) + depends_on("py-pillow@6.2.0:", type=("build", "run")) + depends_on("py-future", type=("build", "run")) |