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| author | Desmond Orton <odesmond21@gmail.com> | 2021-05-28 13:28:14 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-05-28 13:28:14 -0600 |
| commit | 9b99f85abf208612fe8ff7d108b6a68d970706d8 (patch) | |
| tree | cfdd0eccaf9a2d87c0f227c247e7a73589d0c7d5 | |
| parent | 3c9c3c678d0862514cefd9c62a5b28ab0fc7a0d9 (diff) | |
| download | spack-9b99f85abf208612fe8ff7d108b6a68d970706d8.tar.gz spack-9b99f85abf208612fe8ff7d108b6a68d970706d8.tar.bz2 spack-9b99f85abf208612fe8ff7d108b6a68d970706d8.tar.xz spack-9b99f85abf208612fe8ff7d108b6a68d970706d8.zip | |
New Package:py-ucsf-pyem (#23961)
* New Package:py-ucsf-pyem
* Dep additions, eun env deletion
* extraction step change
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
| -rw-r--r-- | var/spack/repos/builtin/packages/py-ucsf-pyem/package.py | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-ucsf-pyem/package.py b/var/spack/repos/builtin/packages/py-ucsf-pyem/package.py new file mode 100644 index 0000000000..5e4e0b7f1f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-ucsf-pyem/package.py @@ -0,0 +1,38 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyUcsfPyem(PythonPackage): + """UCSF pyem is a collection of Python modules and command-line + utilities for electron microscopy of biological samples.""" + + homepage = "https://github.com/asarnow/pyem" + git = "https://github.com/asarnow/pyem.git" + + maintainers = ['dorton21'] + + # Using commit since releases haven't been updated in 2 years + version('2021-04-07', commit='ed0527f98657d21d887357426b74e5240d477fae') + + depends_on('py-setuptools', type='build') + depends_on('py-numpy@1.14:', type=('build', 'run')) + depends_on('py-scipy@1.2:', type=('build', 'run')) + depends_on('py-matplotlib@2.2:', type=('build', 'run')) + depends_on('py-future@0.15:', type=('build', 'run')) + depends_on('py-numba@0.41:', type=('build', 'run')) + depends_on('py-seaborn@0.9:', type=('build', 'run')) + depends_on('py-pandas@0.23.4:', type=('build', 'run')) + depends_on('py-pathos@0.2.1:', type=('build', 'run')) + depends_on('py-pyfftw@0.10:', type=('build', 'run')) + depends_on('py-healpy@1.11:', type=('build', 'run')) + depends_on('py-natsort@6.0:', type=('build', 'run')) + + # Extracts files into bin for proper useage + @run_after('install') + def extraction(self): + mkdir(self.prefix.bin) + install('*.py', self.prefix.bin) |