diff options
| author | Justin S <3630356+codeandkey@users.noreply.github.com> | 2020-04-14 08:51:52 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-04-14 15:51:52 +0200 |
| commit | b131cc5ce06bf078222e991e823a65edb4801550 (patch) | |
| tree | 84af02052cbc9434a0b958425151f2e1c47d4655 | |
| parent | c6e257ae39e2e86f2f1a12d1da044bbf9eff5e3a (diff) | |
| download | spack-b131cc5ce06bf078222e991e823a65edb4801550.tar.gz spack-b131cc5ce06bf078222e991e823a65edb4801550.tar.bz2 spack-b131cc5ce06bf078222e991e823a65edb4801550.tar.xz spack-b131cc5ce06bf078222e991e823a65edb4801550.zip | |
py-vcf-kit: new package at 0.1.6 (#15976)
| -rw-r--r-- | var/spack/repos/builtin/packages/py-vcf-kit/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-vcf-kit/package.py b/var/spack/repos/builtin/packages/py-vcf-kit/package.py new file mode 100644 index 0000000000..f3f4b0302b --- /dev/null +++ b/var/spack/repos/builtin/packages/py-vcf-kit/package.py @@ -0,0 +1,42 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyVcfKit(PythonPackage): + """VCF-kit is a command-line based collection of utilities for performing + analysis on Variant Call Format (VCF) files.""" + + homepage = "https://github.com/AndersenLab/VCF-kit" + url = "https://github.com/AndersenLab/VCF-kit/archive/0.1.6.tar.gz" + + version('0.1.6', sha256='4865414ac9dc6996c0baeefadf1d528c28e6d0c3cc3dbdc28a2cdc6e06212428') + + depends_on('python@2.7:2.8', type=('build', 'run')) + depends_on('py-setuptools', type='build') + depends_on('py-awesome-slugify', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-cython@0.24.1:', type='build') + depends_on('py-cyvcf2@0.6.5:', type=('build', 'run')) + depends_on('py-docopt', type=('build', 'run')) + depends_on('py-biopython', type=('build', 'run')) + depends_on('py-yahmm@1.1.2', type=('build', 'run')) + depends_on('py-clint', type=('build', 'run')) + depends_on('py-requests', type=('build', 'run')) + depends_on('py-networkx@1.11', type=('build', 'run')) + depends_on('py-intervaltree@2.1.0', type=('build', 'run')) + depends_on('py-tabulate', type=('build', 'run')) + depends_on('py-jinja2', type=('build', 'run')) + + depends_on('bwa@0.7.12:', type='run') + depends_on('samtools@1.3:', type='run') + depends_on('bcftools@1.3:', type='run') + depends_on('blast-plus@2.2.31:', type='run') + depends_on('muscle@3.8.31:', type='run') + depends_on('primer3', type='run') + depends_on('vcftools', type='run') |