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| author | George Young <A-N-Other@users.noreply.github.com> | 2024-02-19 21:28:27 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-02-19 22:28:27 +0100 |
| commit | b5b5130bedcf5a5165cfef2e4e3a30dc1ac0f7ef (patch) | |
| tree | 14c289e55674a206374fe9fdd5ab98700e106217 | |
| parent | d670a2a5ce564fb5386fa55deb987803d12e8de0 (diff) | |
| download | spack-b5b5130bedcf5a5165cfef2e4e3a30dc1ac0f7ef.tar.gz spack-b5b5130bedcf5a5165cfef2e4e3a30dc1ac0f7ef.tar.bz2 spack-b5b5130bedcf5a5165cfef2e4e3a30dc1ac0f7ef.tar.xz spack-b5b5130bedcf5a5165cfef2e4e3a30dc1ac0f7ef.zip | |
pblat: add new package (#42517)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
| -rw-r--r-- | var/spack/repos/builtin/packages/pblat/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pblat/package.py b/var/spack/repos/builtin/packages/pblat/package.py new file mode 100644 index 0000000000..b62a96eb2a --- /dev/null +++ b/var/spack/repos/builtin/packages/pblat/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Pblat(MakefilePackage): + """Parallelized blat with multi-threads support""" + + homepage = "http://icebert.github.io/pblat/" + url = "https://github.com/icebert/pblat/archive/refs/tags/2.5.1.tar.gz" + + # `pblat` shares the license for Jim Kent's `blat`. For-profit users must visit: + license_url = "https://kentinformatics.com/" + + version("2.5.1", sha256="e85a4d752b8e159502d529f0f9e47579851a6b466b6c2f1f4d49f598642bc615") + + depends_on("openssl") + depends_on("zlib-api") + + def edit(self, spec, prefix): + makefile = FileFilter("Makefile") + makefile.filter("MACHTYPE=x86_64", "MACHTYPE?=x86_64") + makefile.filter("CC=gcc", "") + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install("pblat", prefix.bin) |