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| author | t-nojiri <68096132+t-nojiri@users.noreply.github.com> | 2020-08-23 12:11:19 +0900 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-08-22 22:11:19 -0500 |
| commit | b721a2e54b7cfe009f21110b47f6b88bf20ab35d (patch) | |
| tree | e593068ce7d4ee8bf3633689170b0f92f020d996 | |
| parent | a6ca236c269200a8f43dd895baa338849c6cd10d (diff) | |
| download | spack-b721a2e54b7cfe009f21110b47f6b88bf20ab35d.tar.gz spack-b721a2e54b7cfe009f21110b47f6b88bf20ab35d.tar.bz2 spack-b721a2e54b7cfe009f21110b47f6b88bf20ab35d.tar.xz spack-b721a2e54b7cfe009f21110b47f6b88bf20ab35d.zip | |
soapdenovo-trans: build on aarch64 (#18187)
* samtools: Add version 0.1.8 for OSS soapdenovo-trans.
* Add depend on zlib and samtools to build on aarch64.
* soapdenovo-trans: Change the condition of depend on zlib and samtools.
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 7 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/soapdenovo-trans/package.py | 5 |
2 files changed, 11 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index bce5fe7b52..54a171cac5 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -23,6 +23,8 @@ class Samtools(Package): version('1.4', sha256='9aae5bf835274981ae22d385a390b875aef34db91e6355337ca8b4dd2960e3f4') version('1.3.1', sha256='6c3d74355e9cf2d9b2e1460273285d154107659efa36a155704b1e4358b7d67e') version('1.2', sha256='420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa') + version('0.1.8', sha256='343daf96f035c499c5b82dce7b4d96b10473308277e40c435942b6449853815b', + url="https://github.com/samtools/samtools/archive/0.1.8.tar.gz") depends_on('zlib') depends_on('ncurses') @@ -55,7 +57,10 @@ class Samtools(Package): else: make('prefix={0}'.format(prefix), 'LIBCURSES={0}'.format(curses_lib)) - make('prefix={0}'.format(prefix), 'install') + if self.spec.version == Version('0.1.8'): + make('prefix={0}'.format(prefix)) + else: + make('prefix={0}'.format(prefix), 'install') # Install dev headers and libs for legacy apps depending on them mkdir(prefix.include) diff --git a/var/spack/repos/builtin/packages/soapdenovo-trans/package.py b/var/spack/repos/builtin/packages/soapdenovo-trans/package.py index 12497e05cc..88c4cff038 100644 --- a/var/spack/repos/builtin/packages/soapdenovo-trans/package.py +++ b/var/spack/repos/builtin/packages/soapdenovo-trans/package.py @@ -16,6 +16,9 @@ class SoapdenovoTrans(MakefilePackage): version('1.0.4', sha256='378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795') + depends_on('zlib', type='link') + depends_on('samtools@0.1.8', type='link') + build_directory = 'src' def edit(self, spec, prefix): @@ -23,6 +26,8 @@ class SoapdenovoTrans(MakefilePackage): makefile = FileFilter('Makefile') makefile.filter('CFLAGS= -O3 -fomit-frame-pointer -static', 'CFLAGS= -O3 -fomit-frame-pointer') + if spec.target.family == 'aarch64': + makefile.filter('ppc64 ia64', 'ppc64 ia64 aarch64') def build(self, spec, prefix): with working_dir(self.build_directory): |