diff options
| author | 健美猫 <weijianwen@gmail.com> | 2018-05-05 05:27:54 +0800 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-05-04 16:27:54 -0500 |
| commit | c53541e448729119a8e71dd7a52b3e7f3ffecc45 (patch) | |
| tree | 4b90baf3763a90d06775062e517e59b90672077a | |
| parent | 490cde87dd56fe106e89640aa6af494a375a1a01 (diff) | |
| download | spack-c53541e448729119a8e71dd7a52b3e7f3ffecc45.tar.gz spack-c53541e448729119a8e71dd7a52b3e7f3ffecc45.tar.bz2 spack-c53541e448729119a8e71dd7a52b3e7f3ffecc45.tar.xz spack-c53541e448729119a8e71dd7a52b3e7f3ffecc45.zip | |
Bump samtools, hstlib and bcftools to version 1.8. (#8020)
* Bump samtools and hstlib to version 1.8.
* rm .bak.
* Bump bcftools to 1.8.
* bcftools@1.8 depends on libzip.
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 4 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/htslib/package.py | 1 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 2 |
3 files changed, 7 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index 8b57c0e1dc..2e2a33f9aa 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -34,12 +34,16 @@ class Bcftools(AutotoolsPackage): homepage = "http://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version('1.8', 'ba6c2fb7eb6dcb208f00ab8b22df475c') version('1.7', 'c972db68d17af9da3a18963f4e5aeca8') version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa') version('1.4', '50ccf0a073bd70e99cdb3c8be830416e') version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb') version('1.2', '8044bed8fce62f7072fc6835420f0906') + depends_on('libzip', when='@1.8:') + + depends_on('htslib@1.8', when='@1.8') depends_on('htslib@1.7', when='@1.7') depends_on('htslib@1.6', when='@1.6') depends_on('htslib@1.4', when='@1.4') diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py index d2818bafd3..ba9fcc5edb 100644 --- a/var/spack/repos/builtin/packages/htslib/package.py +++ b/var/spack/repos/builtin/packages/htslib/package.py @@ -30,6 +30,7 @@ class Htslib(AutotoolsPackage): homepage = "https://github.com/samtools/htslib" + version('1.8', '54e9b3a04251fa59b1878f6b546b5c79') version('1.7', 'd3cc7e080a9a8c4161d8f62b56d3b98d') version('1.6', 'd6fd14e208aca7e08cbe9072233d0af9') version('1.4', '2a22ff382654c033c40e4ec3ea880050') diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index 7e912e832c..a442229e8a 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -33,6 +33,7 @@ class Samtools(Package): homepage = "www.htslib.org" url = "https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" + version('1.8', 'c6e981c92ca00a44656a708c4b52aba3') version('1.7', '2240175242b5183bfa6baf1483f68023') version('1.6', 'b756f05fd5d1a7042074417edb8c9aea') version('1.4', '8cbd7d2a0ec16d834babcd6c6d85d691') @@ -41,6 +42,7 @@ class Samtools(Package): depends_on('ncurses') # htslib became standalone @1.3.1, must use corresponding version + depends_on('htslib@1.8', when='@1.8') depends_on('htslib@1.7', when='@1.7') depends_on('htslib@1.6', when='@1.6') depends_on('htslib@1.4', when='@1.4') |