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authorTodd Gamblin <tgamblin@llnl.gov>2016-05-21 14:33:05 -0700
committerTodd Gamblin <tgamblin@llnl.gov>2016-05-21 14:33:05 -0700
commitd0870865817054288fbebb7dda626b6e8aeb0114 (patch)
treeed1dccf9ddd5668f1b19a4133eda376395e11c96
parentd94972503a4377b017e5a0e33b8a6b0b68cb862b (diff)
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update documentation.
-rw-r--r--lib/spack/docs/configuration.rst (renamed from lib/spack/docs/site_configuration.rst)78
-rw-r--r--lib/spack/docs/index.rst2
-rw-r--r--lib/spack/docs/packaging_guide.rst60
3 files changed, 74 insertions, 66 deletions
diff --git a/lib/spack/docs/site_configuration.rst b/lib/spack/docs/configuration.rst
index 3abfa21a9d..c0b79a7f44 100644
--- a/lib/spack/docs/site_configuration.rst
+++ b/lib/spack/docs/configuration.rst
@@ -1,6 +1,6 @@
-.. _site-configuration:
+.. _configuration:
-Site configuration
+Configuration
===================================
.. _temp-space:
@@ -55,7 +55,7 @@ directory is.
External Packages
-~~~~~~~~~~~~~~~~~~~~~
+----------------------------
Spack can be configured to use externally-installed
packages rather than building its own packages. This may be desirable
if machines ship with system packages, such as a customized MPI
@@ -78,7 +78,7 @@ This example lists three installations of OpenMPI, one built with gcc,
one built with gcc and debug information, and another built with Intel.
If Spack is asked to build a package that uses one of these MPIs as a
dependency, it will use the the pre-installed OpenMPI in
-the given directory.
+the given directory.
Each ``packages.yaml`` begins with a ``packages:`` token, followed
by a list of package names. To specify externals, add a ``paths``
@@ -110,7 +110,7 @@ be:
paths:
openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib: /opt/openmpi-1.4.3
openmpi@1.4.3%gcc@4.4.7=chaos_5_x86_64_ib+debug: /opt/openmpi-1.4.3-debug
- openmpi@1.6.5%intel@10.1=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
+ openmpi@1.6.5%intel@10.1=chaos_5_x86_64_ib: /opt/openmpi-1.6.5-intel
buildable: False
The addition of the ``buildable`` flag tells Spack that it should never build
@@ -118,13 +118,73 @@ its own version of OpenMPI, and it will instead always rely on a pre-built
OpenMPI. Similar to ``paths``, ``buildable`` is specified as a property under
a package name.
-The ``buildable`` does not need to be paired with external packages.
-It could also be used alone to forbid packages that may be
+The ``buildable`` does not need to be paired with external packages.
+It could also be used alone to forbid packages that may be
buggy or otherwise undesirable.
+Concretization Preferences
+--------------------------------
+
+Spack can be configured to prefer certain compilers, package
+versions, depends_on, and variants during concretization.
+The preferred configuration can be controlled via the
+``~/.spack/packages.yaml`` file for user configuations, or the
+``etc/spack/packages.yaml`` site configuration.
+
+
+Here's an example packages.yaml file that sets preferred packages:
+
+.. code-block:: sh
+
+ packages:
+ dyninst:
+ compiler: [gcc@4.9]
+ variants: +debug
+ gperftools:
+ version: [2.2, 2.4, 2.3]
+ all:
+ compiler: [gcc@4.4.7, gcc@4.6:, intel, clang, pgi]
+ providers:
+ mpi: [mvapich, mpich, openmpi]
+
+
+At a high level, this example is specifying how packages should be
+concretized. The dyninst package should prefer using gcc 4.9 and
+be built with debug options. The gperftools package should prefer version
+2.2 over 2.4. Every package on the system should prefer mvapich for
+its MPI and gcc 4.4.7 (except for Dyninst, which overrides this by preferring gcc 4.9).
+These options are used to fill in implicit defaults. Any of them can be overwritten
+on the command line if explicitly requested.
+
+Each packages.yaml file begins with the string ``packages:`` and
+package names are specified on the next level. The special string ``all``
+applies settings to each package. Underneath each package name is
+one or more components: ``compiler``, ``variants``, ``version``,
+or ``providers``. Each component has an ordered list of spec
+``constraints``, with earlier entries in the list being preferred over
+later entries.
+
+Sometimes a package installation may have constraints that forbid
+the first concretization rule, in which case Spack will use the first
+legal concretization rule. Going back to the example, if a user
+requests gperftools 2.3 or later, then Spack will install version 2.4
+as the 2.4 version of gperftools is preferred over 2.3.
+
+An explicit concretization rule in the preferred section will always
+take preference over unlisted concretizations. In the above example,
+xlc isn't listed in the compiler list. Every listed compiler from
+gcc to pgi will thus be preferred over the xlc compiler.
+
+The syntax for the ``provider`` section differs slightly from other
+concretization rules. A provider lists a value that packages may
+``depend_on`` (e.g, mpi) and a list of rules for fulfilling that
+dependency.
+
+
+
Profiling
-~~~~~~~~~~~~~~~~~~~~~
+------------------
Spack has some limited built-in support for profiling, and can report
statistics using standard Python timing tools. To use this feature,
@@ -133,7 +193,7 @@ supply ``-p`` to Spack on the command line, before any subcommands.
.. _spack-p:
``spack -p``
-^^^^^^^^^^^^^^^^^^
+~~~~~~~~~~~~~~~~~
``spack -p`` output looks like this:
diff --git a/lib/spack/docs/index.rst b/lib/spack/docs/index.rst
index d6ce52b747..98ed9ff0fe 100644
--- a/lib/spack/docs/index.rst
+++ b/lib/spack/docs/index.rst
@@ -47,7 +47,7 @@ Table of Contents
basic_usage
packaging_guide
mirrors
- site_configuration
+ configuration
developer_guide
command_index
package_list
diff --git a/lib/spack/docs/packaging_guide.rst b/lib/spack/docs/packaging_guide.rst
index 650e0ee3b2..63c411ffb5 100644
--- a/lib/spack/docs/packaging_guide.rst
+++ b/lib/spack/docs/packaging_guide.rst
@@ -1648,8 +1648,8 @@ point will Spack call the ``install()`` method for your package.
Concretization in Spack is based on certain selection policies that
tell Spack how to select, e.g., a version, when one is not specified
explicitly. Concretization policies are discussed in more detail in
-:ref:`site-configuration`. Sites using Spack can customize them to
-match the preferences of their own users.
+:ref:`configuration`. Sites using Spack can customize them to match
+the preferences of their own users.
.. _spack-spec:
@@ -1682,60 +1682,8 @@ be concretized on their system. For example, one user may prefer packages
built with OpenMPI and the Intel compiler. Another user may prefer
packages be built with MVAPICH and GCC.
-Spack can be configured to prefer certain compilers, package
-versions, depends_on, and variants during concretization.
-The preferred configuration can be controlled via the
-``~/.spack/packages.yaml`` file for user configuations, or the
-``etc/spack/packages.yaml`` site configuration.
-
-
-Here's an example packages.yaml file that sets preferred packages:
-
-.. code-block:: sh
-
- packages:
- dyninst:
- compiler: [gcc@4.9]
- variants: +debug
- gperftools:
- version: [2.2, 2.4, 2.3]
- all:
- compiler: [gcc@4.4.7, gcc@4.6:, intel, clang, pgi]
- providers:
- mpi: [mvapich, mpich, openmpi]
-
-
-At a high level, this example is specifying how packages should be
-concretized. The dyninst package should prefer using gcc 4.9 and
-be built with debug options. The gperftools package should prefer version
-2.2 over 2.4. Every package on the system should prefer mvapich for
-its MPI and gcc 4.4.7 (except for Dyninst, which overrides this by preferring gcc 4.9).
-These options are used to fill in implicit defaults. Any of them can be overwritten
-on the command line if explicitly requested.
-
-Each packages.yaml file begins with the string ``packages:`` and
-package names are specified on the next level. The special string ``all``
-applies settings to each package. Underneath each package name is
-one or more components: ``compiler``, ``variants``, ``version``,
-or ``providers``. Each component has an ordered list of spec
-``constraints``, with earlier entries in the list being preferred over
-later entries.
-
-Sometimes a package installation may have constraints that forbid
-the first concretization rule, in which case Spack will use the first
-legal concretization rule. Going back to the example, if a user
-requests gperftools 2.3 or later, then Spack will install version 2.4
-as the 2.4 version of gperftools is preferred over 2.3.
-
-An explicit concretization rule in the preferred section will always
-take preference over unlisted concretizations. In the above example,
-xlc isn't listed in the compiler list. Every listed compiler from
-gcc to pgi will thus be preferred over the xlc compiler.
-
-The syntax for the ``provider`` section differs slightly from other
-concretization rules. A provider lists a value that packages may
-``depend_on`` (e.g, mpi) and a list of rules for fulfilling that
-dependency.
+See the `documentation in the config section <concretization-preferences_>`_
+for more details.
.. _install-method: