halc: Create new package. (#8795)

* halc: Create new package.

* fix flake8 error.

* Modification

1 files changed, 48 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/halc/package.py b/var/spack/repos/builtin/packages/halc/package.py
new file mode 100644
index 0000000000..2e9b50779a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/halc/package.py
@@ -0,0 +1,48 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Halc(MakefilePackage):
+    """HALC is software that makes error correction for long reads with
+     high throughput."""
+
+    homepage = "https://github.com/lanl001/halc"
+    url      = "https://github.com/lanl001/halc/archive/v1.1.tar.gz"
+
+    version('1.1', '4b289b366f6a5400ca481993aa68dd9c')
+
+    depends_on('blasr', type='run')
+    depends_on('lordec', type='run')
+    depends_on('dos2unix', type='build')
+    depends_on('python', type='run')
+
+    parallel = False
+
+    def install(self, spec, prefix):
+        install_tree('bin', prefix.bin)
+        install('runHALC.py', prefix.bin)
+        dos2unix = which('dos2unix')
+        dos2unix(join_path(self.prefix.bin, 'runHALC.py'))