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| author | peetsv <32349688+peetsv@users.noreply.github.com> | 2018-03-06 09:27:03 -0800 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@gmail.com> | 2018-03-06 18:27:03 +0100 |
| commit | d649fda48a8b8353405a8a0197457a891932c708 (patch) | |
| tree | 19b8faf2a3076f1a7657d8cfc3f542ab5ecf6705 | |
| parent | 8d6738a3e66c2c02de68c2a2496a62b2d91228ac (diff) | |
| download | spack-d649fda48a8b8353405a8a0197457a891932c708.tar.gz spack-d649fda48a8b8353405a8a0197457a891932c708.tar.bz2 spack-d649fda48a8b8353405a8a0197457a891932c708.tar.xz spack-d649fda48a8b8353405a8a0197457a891932c708.zip | |
py-crossmap: adding new package (#7108)
| -rw-r--r-- | var/spack/repos/builtin/packages/py-crossmap/package.py | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-crossmap/package.py b/var/spack/repos/builtin/packages/py-crossmap/package.py new file mode 100644 index 0000000000..bb8c9d60f7 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-crossmap/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyCrossmap(PythonPackage): + """CrossMap is a program for convenient conversion of genome + coordinates (or annotation files) between different assemblies""" + + homepage = "http://crossmap.sourceforge.net" + url = "https://downloads.sourceforge.net/project/crossmap/CrossMap-0.2.7.tar.gz" + + version('0.2.7', '91dadec9644ee3038f20ee7a6eb8dfb7') + + depends_on('python@2.7:2.7.999', type=('build', 'run')) + depends_on('py-cython@0.17:', type='build') + depends_on('py-pysam', type='build') |