Merge pull request #1406 from glennpj/r-np

New package - r-np

3 files changed, 134 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-boot/package.py b/var/spack/repos/builtin/packages/r-boot/package.py
new file mode 100644
index 0000000000..1f2f541fec
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-boot/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RBoot(Package):
+    """Functions and datasets for bootstrapping from the book "Bootstrap
+    Methods and Their Application" by A. C. Davison and D. V. Hinkley (1997,
+    CUP), originally written by Angelo Canty for S."""
+
+    homepage = "https://cran.r-project.org/package=boot"
+    url      = "https://cran.r-project.org/src/contrib/boot_1.3-18.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/boot"
+
+    version('1.3-18', '711dd58af14e1027eb8377d9202e9b6f')
+
+    extends('R')
+
+    def install(self, spec, prefix):
+        R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
+          self.stage.source_path)
diff --git a/var/spack/repos/builtin/packages/r-cubature/package.py b/var/spack/repos/builtin/packages/r-cubature/package.py
new file mode 100644
index 0000000000..1d8f837922
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-cubature/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RCubature(Package):
+    """Adaptive multivariate integration over hypercubes"""
+
+    homepage = "https://cran.r-project.org/package=cubature"
+    url      = "https://cran.r-project.org/src/contrib/cubature_1.1-2.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/cubature"
+
+    version('1.1-2', '5617e1d82baa803a3814d92461da45c9')
+
+    extends('R')
+
+    def install(self, spec, prefix):
+        R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
+          self.stage.source_path)
diff --git a/var/spack/repos/builtin/packages/r-np/package.py b/var/spack/repos/builtin/packages/r-np/package.py
new file mode 100644
index 0000000000..bff7d0f195
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-np/package.py
@@ -0,0 +1,50 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RNp(Package):
+    """This package provides a variety of nonparametric (and semiparametric)
+    kernel methods that seamlessly handle a mix of continuous, unordered, and
+    ordered factor data types. We would like to gratefully acknowledge support
+    from the Natural Sciences and Engineering Research Council of Canada
+    (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council
+    of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic
+    Research Computing Network (SHARCNET:www.sharcnet.ca)."""
+
+    homepage = "https://github.com/JeffreyRacine/R-Package-np/"
+    url      = "https://cran.r-project.org/src/contrib/np_0.60-2.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/np"
+
+    version('0.60-2', 'e094d52ddff7280272b41e6cb2c74389')
+
+    extends('R')
+
+    depends_on('r-boot', type=nolink)
+    depends_on('r-cubature', type=nolink)
+
+    def install(self, spec, prefix):
+        R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
+          self.stage.source_path)