kallisto: new package (#5063)

1 files changed, 39 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/kallisto/package.py b/var/spack/repos/builtin/packages/kallisto/package.py
new file mode 100644
index 0000000000..c0f70aa1c0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/kallisto/package.py
@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Kallisto(CMakePackage):
+    """kallisto is a program for quantifying abundances of transcripts from
+       RNA-Seq data."""
+
+    homepage = "http://pachterlab.github.io/kallisto"
+    url      = "https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz"
+
+    version('0.43.1', '54fc9b70ca44e4633f02c962cbc59737')
+
+    depends_on('zlib')
+    depends_on('hdf5')
+    depends_on('mpich')