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authorYifan Zhu <ifanzhu@foxmail.com>2017-10-24 04:21:31 -0500
committerTodd Gamblin <tgamblin@llnl.gov>2017-10-24 11:21:31 +0200
commitf814e9bba127434d1ae7d951f2c2fc06796dcb95 (patch)
tree924504dd776a474ca12d455ffad0af6568151baf
parent7a176ca89e00a9285f6b0092eb9b8adf5b3980f1 (diff)
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r-illuminaio: created new package (#5849)
-rw-r--r--var/spack/repos/builtin/packages/r-illuminaio/package.py39
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-illuminaio/package.py b/var/spack/repos/builtin/packages/r-illuminaio/package.py
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+++ b/var/spack/repos/builtin/packages/r-illuminaio/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RIlluminaio(RPackage):
+ """Tools for parsing Illumina's microarray output files, including
+ IDAT."""
+
+ homepage = "http://bioconductor.org/packages/illuminaio/"
+ url = "https://git.bioconductor.org/packages/illuminaio"
+ list_url = homepage
+
+ version('0.18.0', git='https://git.bioconductor.org/packages/illuminaio', commit='e6b8ab1f8eacb760aebdb4828e9cfbf07da06eda')
+
+ depends_on('r-base64', type=('build', 'run'))
+ depends_on('r@3.4.0:3.4.9', when='@0.18.0')