diff options
| author | Justin Stanley <molecuul@users.noreply.github.com> | 2018-09-14 15:55:52 -0500 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2018-09-14 13:55:52 -0700 |
| commit | ff6b9b99fae8d2c993dbf3689899ed8998a541c6 (patch) | |
| tree | e210ff289793405f6455154114bf4359a09948a6 | |
| parent | 451328d6e6b8bd29b4a840d9fdc6ab278a1cf14a (diff) | |
| download | spack-ff6b9b99fae8d2c993dbf3689899ed8998a541c6.tar.gz spack-ff6b9b99fae8d2c993dbf3689899ed8998a541c6.tar.bz2 spack-ff6b9b99fae8d2c993dbf3689899ed8998a541c6.tar.xz spack-ff6b9b99fae8d2c993dbf3689899ed8998a541c6.zip | |
gatk: new version (#9202)
* gatk: added 4.0.8.1, fixed binary install
* gatk: fix flake8 conflict
* gatk: improve comments and modify install
| -rw-r--r-- | var/spack/repos/builtin/packages/gatk/package.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/gatk/package.py b/var/spack/repos/builtin/packages/gatk/package.py index f7ce7c1714..e2462ea4e6 100644 --- a/var/spack/repos/builtin/packages/gatk/package.py +++ b/var/spack/repos/builtin/packages/gatk/package.py @@ -35,6 +35,8 @@ class Gatk(Package): homepage = "https://software.broadinstitute.org/gatk/" url = "https://github.com/broadinstitute/gatk/releases/download/4.0.4.0/gatk-4.0.4.0.zip" + version('4.0.8.1', sha256='6d47463dfd8c16ffae82fd29e4e73503e5b7cd0fcc6fea2ed50ee3760dd9acd9', + url='https://github.com/broadinstitute/gatk/archive/4.0.8.1.tar.gz') version('4.0.4.0', '083d655883fb251e837eb2458141fc2b', url="https://github.com/broadinstitute/gatk/releases/download/4.0.4.0/gatk-4.0.4.0.zip") version('3.8-0', '0581308d2a25f10d11d3dfd0d6e4d28e', extension='tar.gz', @@ -46,10 +48,10 @@ class Gatk(Package): def install(self, spec, prefix): mkdirp(prefix.bin) - # The list of files to install varies with release... - # ... but skip the spack-{build.env}.out files and gatkdoc directory. + + # Install all executable non-script files to prefix bin files = [x for x in glob.glob("*") - if not re.match("^spack-", x) and not re.match("^gatkdoc", x)] + if not re.match("^.*\.sh$", x) and is_exe(x)] for f in files: install(f, prefix.bin) |