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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2023-01-16 20:31:00 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-01-17 03:31:00 +0100 |
| commit | 6f19eb5e674a05f1be7a46891f0eb3eaf7000446 (patch) | |
| tree | fd52b49f30792831bf54170941de42f8f6d60ddc /var/spack/repos/builtin/packages/hisat2/sra.patch | |
| parent | b7e416046f95b21f64f1ac0af7e8ce7a04ad4eec (diff) | |
| download | spack-6f19eb5e674a05f1be7a46891f0eb3eaf7000446.tar.gz spack-6f19eb5e674a05f1be7a46891f0eb3eaf7000446.tar.bz2 spack-6f19eb5e674a05f1be7a46891f0eb3eaf7000446.tar.xz spack-6f19eb5e674a05f1be7a46891f0eb3eaf7000446.zip | |
hisat2: add version 2.2.1 and sra variant (#34966)
- add python dependency
- add perl dependency
- set python and perl interpreters in scripts
Diffstat (limited to 'var/spack/repos/builtin/packages/hisat2/sra.patch')
| -rw-r--r-- | var/spack/repos/builtin/packages/hisat2/sra.patch | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/hisat2/sra.patch b/var/spack/repos/builtin/packages/hisat2/sra.patch new file mode 100644 index 0000000000..b7cbec035c --- /dev/null +++ b/var/spack/repos/builtin/packages/hisat2/sra.patch @@ -0,0 +1,11 @@ +--- a/Makefile 2020-07-24 10:46:16.000000000 -0500 ++++ b/Makefile 2023-01-12 20:28:08.919588735 -0600 +@@ -94,7 +94,7 @@ + SERACH_INC = + ifeq (1,$(USE_SRA)) + SRA_DEF = -DUSE_SRA +- SRA_LIB = -lncbi-ngs-c++-static -lngs-c++-static -lncbi-vdb-static -ldl ++ SRA_LIB = -lncbi-ngs-c++-static -lngs-c++-static -lncbi-ngs-static -lncbi-vdb-static -ldl + SEARCH_INC += -I$(NCBI_NGS_DIR)/include -I$(NCBI_VDB_DIR)/include + SEARCH_LIBS += -L$(NCBI_NGS_DIR)/lib64 -L$(NCBI_VDB_DIR)/lib64 + endif |