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authorGeorge Hartzell <hartzell@alerce.com>2017-10-30 21:49:52 -0700
committerChristoph Junghans <christoph.junghans@gmail.com>2017-10-30 22:49:52 -0600
commite69542c01959e7cf874c6ca1ae5c94d0c9a0ba1f (patch)
tree235546b8f4c552304849f2bb4b5a2d3313617fc8 /var/spack/repos/builtin/packages/htslib
parent10b27ec788edaaa6d9e484288fb6acc8d9b6643c (diff)
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Fix tarball URL's for htslib (#5993)
A recent update (#5907) to htslib added a different URL for an old version of htslib. Now the package is using that URL as the pattern for the newer versions too. I have a vague memory of running into this before, that it's a known issue. This fixes it by adding an explicit `url_for_version` routine.
Diffstat (limited to 'var/spack/repos/builtin/packages/htslib')
-rw-r--r--var/spack/repos/builtin/packages/htslib/package.py13
1 files changed, 10 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py
index 7fdc79406e..6880dcf398 100644
--- a/var/spack/repos/builtin/packages/htslib/package.py
+++ b/var/spack/repos/builtin/packages/htslib/package.py
@@ -29,13 +29,11 @@ class Htslib(AutotoolsPackage):
"""C library for high-throughput sequencing data formats."""
homepage = "https://github.com/samtools/htslib"
- url = "https://github.com/samtools/htslib/releases/download/1.3.1/htslib-1.3.1.tar.bz2"
version('1.6', 'd6fd14e208aca7e08cbe9072233d0af9')
version('1.4', '2a22ff382654c033c40e4ec3ea880050')
version('1.3.1', '16d78f90b72f29971b042e8da8be6843')
- version('1.2', '64026d659c3b062cfb6ddc8a38e9779f',
- url='https://github.com/samtools/htslib/archive/1.2.tar.gz')
+ version('1.2', '64026d659c3b062cfb6ddc8a38e9779f')
depends_on('zlib')
depends_on('bzip2', when="@1.4:")
@@ -45,3 +43,12 @@ class Htslib(AutotoolsPackage):
depends_on('autoconf', when="@1.2")
depends_on('automake', when="@1.2")
depends_on('libtool', when="@1.2")
+
+ # v1.2 uses the automagically assembled tarball from .../archive/...
+ # everything else uses the tarballs uploaded to the release
+ def url_for_version(self, version):
+ if version.string == '1.2':
+ return 'https://github.com/samtools/htslib/archive/1.2.tar.gz'
+ else:
+ url = "https://github.com/samtools/htslib/releases/download/{0}/htslib-{0}.tar.bz2"
+ return url.format(version.dotted)