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| author | Todd Gamblin <tgamblin@llnl.gov> | 2018-11-13 11:05:17 -0600 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2018-11-13 11:05:17 -0600 |
| commit | 42962f2409fe7b46543dc5974c45bb6392fcea99 (patch) | |
| tree | 2063188dd6902f9b6ea7e8a2601f6131ac88046d /var/spack/repos/builtin/packages/lumpy-sv/package.py | |
| parent | 041aa143db6964575625f1849de639541efb83a5 (diff) | |
| parent | 8554e933d2a236df20d07a6e0416ab444790bd3d (diff) | |
| download | spack-0.12.0.tar.gz spack-0.12.0.tar.bz2 spack-0.12.0.tar.xz spack-0.12.0.zip | |
Merge branch 'releases/v0.12'v0.12.0
Diffstat (limited to 'var/spack/repos/builtin/packages/lumpy-sv/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/lumpy-sv/package.py | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/lumpy-sv/package.py b/var/spack/repos/builtin/packages/lumpy-sv/package.py new file mode 100644 index 0000000000..709f7d0f4c --- /dev/null +++ b/var/spack/repos/builtin/packages/lumpy-sv/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class LumpySv(MakefilePackage): + """A probabilistic framework for structural variant discovery.""" + + homepage = "https://github.com/arq5x/lumpy-sv" + url = "https://github.com/arq5x/lumpy-sv/archive/0.2.13.tar.gz" + + version('0.2.13', '36929d29fc3a171d3abbe1d93f9f3b50') + + depends_on('htslib') + + def edit(self, spec, prefix): + makefile = FileFilter('Makefile') + makefile.filter('export CXX .*', '') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) |