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| author | Douglas Duckworth <quackmaster@protonmail.com> | 2017-05-16 10:42:37 -0400 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-05-16 09:42:37 -0500 |
| commit | 9a4b86cd49505cc4a1181d0aaae0d44204a03965 (patch) | |
| tree | a74863eed942b1fbd97f3cfc199d5b9333ac286e /var | |
| parent | fbc9d5a634751cc65cd3f7b4941db15b2e8deb5b (diff) | |
| download | spack-9a4b86cd49505cc4a1181d0aaae0d44204a03965.tar.gz spack-9a4b86cd49505cc4a1181d0aaae0d44204a03965.tar.bz2 spack-9a4b86cd49505cc4a1181d0aaae0d44204a03965.tar.xz spack-9a4b86cd49505cc4a1181d0aaae0d44204a03965.zip | |
added meme package (#4257)
* added albacore package as well as dependency py-ont-fast5-api
* added py-cutadapt and dependency py-xopen
* made more changes to albacore and cutadapt as well as dependencies
* made changes again per @adamjstewart
* fixed by python n00b errors i think
* fixed?
* tw=79
* made changes to py-ont-fast5-api ont-albacore
* removed bad characters
* albacore requires setuptools as build and run dependency
* added vmd
* added back albacore
* removed vmd package
* added meme software
* libz is only needed as link depedency for meme
* added libxml2 libxslt libgcrypt as link dependencies
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/meme/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/meme/package.py b/var/spack/repos/builtin/packages/meme/package.py new file mode 100644 index 0000000000..ca7554c565 --- /dev/null +++ b/var/spack/repos/builtin/packages/meme/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Meme(AutotoolsPackage): + """The MEME Suite allows the biologist to discover novel motifs in + collections of unaligned nucleotide or protein sequences, and to perform a + wide variety of other motif-based analyses.""" + + homepage = "http://meme-suite.org" + url = "http://meme-suite.org/meme-software/4.11.4/meme_4.11.4.tar.gz" + + version('4.11.4', '371f513f82fa0888205748e333003897') + + depends_on('zlib', type=('link')) + depends_on('libxml2', type=('link')) + depends_on('libxslt', type=('link')) + depends_on('libgcrypt', type=('link')) + depends_on('perl', type=('build', 'run')) + depends_on('python@2.7:', type=('build', 'run')) |