New package bucky (#4677)

1 files changed, 57 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/bucky/package.py b/var/spack/repos/builtin/packages/bucky/package.py
new file mode 100644
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+++ b/var/spack/repos/builtin/packages/bucky/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Bucky(MakefilePackage):
+    """BUCKy is a free program to combine molecular data from multiple loci.
+       BUCKy estimates the dominant history of sampled individuals, and how
+       much of the genome supports each relationship, using Bayesian
+       concordance analysis."""
+
+    homepage = "http://www.stat.wisc.edu/~ane/bucky/index.html"
+    url      = "http://dstats.net/download/http://www.stat.wisc.edu/~ane/bucky/v1.4/bucky-1.4.4.tgz"
+
+    version('1.4.4', 'f0c910dd1d411d112637826519943a6d')
+
+    # Compilation requires gcc
+    conflicts('%cce')
+    conflicts('%clang')
+    conflicts('%intel')
+    conflicts('%nag')
+    conflicts('%pgi')
+    conflicts('%xl')
+    conflicts('%xl_r')
+
+    build_directory = 'src'
+
+    def install(self, spec, prefix):
+        with working_dir('src'):
+            mkdirp(prefix.bin)
+            install('bucky', prefix.bin)
+            install('mbsum', prefix.bin)
+        install_tree('data', prefix.data)
+        install_tree('doc', prefix.doc)
+        install_tree('scripts', prefix.scripts)