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authorEric <erimar77@users.noreply.github.com>2018-04-23 16:51:42 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2018-04-23 16:51:42 -0500
commit8e1a7eaafa886fe6a416ce26a915724118cf4274 (patch)
treeabb4ff0676d96ab468445bd72b63b16dfe07309a /var
parente3c708fafedb9313eb4d34fec1e271ffb290de06 (diff)
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ARAGORN: Create new package (#7875)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/aragorn/package.py46
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/aragorn/package.py b/var/spack/repos/builtin/packages/aragorn/package.py
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+++ b/var/spack/repos/builtin/packages/aragorn/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Aragorn(Package):
+ """ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide
+ sequences."""
+
+ homepage = "http://mbio-serv2.mbioekol.lu.se/ARAGORN"
+ url = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn1.2.38.tgz"
+
+ version('1.2.38', '1df0ed600069e6f520e5cd989de1eaf0')
+
+ phases = ['build', 'install']
+
+ def build(self, spec, prefix):
+ cc = Executable(spack_cc)
+ cc('-O3', '-ffast-math', '-finline-functions',
+ '-oaragorn', 'aragorn' + format(spec.version.dotted) + '.c')
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install('aragorn', prefix.bin)